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Certificate of Analysis LRR G11.31

Certificate of Analysis: Live Reef Rubble, Batch LRR G11.31

lrr.g11.31_Certificate_of_Analysis

    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in and on a batch of Live Reef Rubble. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrr.g11.31
Batch Name g12-15-25
Sample Date 03/20/2026 10:30 AM

Microbial Diversity

This sample contained DNA from 653 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Nitrosomonadaceae
Type Percent of Community Genus Species
2503 0.06 Unknown Unknown
Nitrososphaeraceae
Type Percent of Community Genus Species
4288 0.04 Candidatus Unknown
Cenarchaeaceae
Type Percent of Community Genus Species
73 0.64 Nitrosopumilus Unknown
9677 0.40 Nitrosopumilus Unknown
390997 0.35 Nitrosopumilus Unknown
3535 0.26 Cenarchaeum symbiosum
31722 0.20 Unknown Unknown
393806 0.02 Unknown Unknown
395261 0.01 Cenarchaeum symbiosum

Nitrite-Oxidizing Bacteria

Nitrospiraceae
Type Percent of Community Genus Species
25186 0.43 Unknown Unknown
9977 0.34 Unknown Unknown
395295 0.01 Unknown Unknown
395408 0.01 Unknown Unknown
The nitrifying community in this sample included 13 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marcescens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 1038 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Apomatus voightae (Annelida), Fabricinuda trilobata (Annelida), Syllis lutea (Annelida), Sabellastarte sp. (Annelida), Ophryotrocha labronica (Annelida), Terebella lapidaria (Annelida), Augeneriella hummelincki (Annelida), Grassleia cf. (Annelida), Fabricinuda pseudopalpa (Annelida), Syllis garciai (Annelida), Paramphinome jeffreysii (Annelida), Protula sp. (Annelida), Lankesteria hesperidiiformis (Apicomplexa), uncultured eukaryote 569082 (Apicomplexa), Nenesidea oligodentata (Arthropoda), Paramphiascella fulvofasciata (Arthropoda), Liposcelis bostrychophila (Arthropoda), Tetragonicipitidae sp. (Arthropoda), Attheyella crassa (Arthropoda), invertebrate environmental (Arthropoda), uncultured eukaryote 572875 (Arthropoda), Friedmanniomyces simplex (Ascomycota), Penicillium griseofulvum (Ascomycota), Humulus lupulus (Ascomycota), Fusarium oxysporum (Ascomycota), Capronia pilosella (Ascomycota), Umbilicaria rossica (Ascomycota), Stropharia ambigua (Basidiomycota), Wallemia sebi (Basidiomycota), Fomitopsis pinicola (Basidiomycota), Malassezia globosa (Basidiomycota), uncultured Tremellomycetes 571933 (Basidiomycota), Trametes versicolor (Basidiomycota), Megalocystidium leucoxanthum (Basidiomycota), Paradinium poucheti (Cercozoa), uncultured marine 32863 (Cercozoa), uncultured marine 15485 (Cercozoa), Haplosporidian parasite (Cercozoa), Lotharella globosa (Cercozoa), uncultured marine 405866 (Cercozoa), Lotharella oceanica (Cercozoa), Protaspis grandis (Cercozoa), marine metagenome (Cercozoa), uncultured marine 573300 (Cercozoa), uncultured Chytridiomycota 171718 (Chytridiomycota), uncultured fungus 521840 (Chytridiomycota), Amphileptus litonotiformis (Ciliophora), Thigmokeronopsis sp. (Ciliophora), uncultured eukaryote 34673 (Ciliophora), uncultured eukaryote 138061 (Ciliophora), uncultured eukaryote 281202 (Ciliophora), Adumbratosticha tetracirrata (Ciliophora), Zoothamnopsis sinica (Ciliophora), Microxysma acutum (Ciliophora), Pseudoamphisiella quadrinucleata (Ciliophora), Olindias phosphorica (Cnidaria), Melicertum octocostatum (Cnidaria), Staurocladia vallentini (Cnidaria), Polyorchis haplus (Cnidaria), Eleutheria claparedei (Cnidaria), Paramuricea sp. (Cnidaria), uncultured archaeon 83350 (Crenarchaeota), uncultured archaeon 569247 (Crenarchaeota), Psammodictyon constrictum (Diatomea), uncultured eukaryote 6222 (Diatomea), Amphora sp. (Diatomea), Haslea ostrearia (Diatomea), Navicula arenaria (Diatomea), uncultured eukaryote 52878 (Diatomea), uncultured marine 480235 (Diatomea), uncultured marine 15228 (Diatomea), uncultured eukaryote 152348 (Diatomea), uncultured eukaryote 308578 (Diatomea), Rhaphoneis sp. (Diatomea), Nitzschia sigma (Diatomea), uncultured eukaryote 402670 (Diatomea), uncultured eukaryote 568743 (Diatomea), Synedra sp. (Diatomea), uncultured stramenopile 267345 (Diatomea), uncultured marine 406296 (Diatomea), uncultured marine 510447 (Diatomea), Rhaphoneis belgicae (Diatomea), Seminavis sp. (Diatomea), uncultured marine 569254 (Diatomea), uncultured stramenopile 570806 (Diatomea), uncultured eukaryote 570817 (Diatomea), uncultured marine 570827 (Diatomea), Haslea spicula (Diatomea), uncultured eukaryote 571935 (Diatomea), uncultured marine 54837 (Diatomea), Nitzschia longissima (Diatomea), uncultured stramenopile 403231 (Diatomea), Pseudogomphonema sp. (Diatomea), Stauroneis kriegeri (Diatomea), Navicula reinhardtii (Diatomea), Amphora coffeiformis (Diatomea), uncultured stramenopile 569751 (Diatomea), uncultured marine 571928 (Diatomea), uncultured marine 572778 (Diatomea), uncultured marine 572796 (Diatomea), uncultured eukaryote 572809 (Diatomea), uncultured eukaryote 572810 (Diatomea), Navicula cryptocephala (Diatomea), uncultured stramenopile 572813 (Diatomea), uncultured stramenopile 572814 (Diatomea), uncultured stramenopile 572815 (Diatomea), Craticula molestiformis (Diatomea), uncultured marine 572818 (Diatomea), uncultured eukaryote 572883 (Diatomea), uncultured eukaryote 572897 (Diatomea), uncultured stramenopile 572898 (Diatomea), uncultured stramenopile 572900 (Diatomea), Craticula pseudocitrus (Diatomea), Phaeodactylum tricornutum (Diatomea), uncultured eukaryote 573298 (Diatomea), uncultured eukaryote 573357 (Diatomea), Cocconeis cf. (Diatomea), Ostreopsis cf. (Dinoflagellata), uncultured eukaryote 61173 (Dinoflagellata), Symbiodinium sp. (Dinoflagellata), Heterocapsa triquetra (Dinoflagellata), uncultured eukaryote 569754 (Dinoflagellata), uncultured eukaryote 572803 (Dinoflagellata), uncultured eukaryote 572830 (Dinoflagellata), uncultured eukaryote 573373 (Dinoflagellata), Diplonema sp. (Euglenozoa), Petalomonas cantuscygni (Euglenozoa), Notosolenus urceolatus (Euglenozoa), uncultured eukaryote 295877 (Euglenozoa), Neobodo designis (Euglenozoa), Paraphysomonas imperforata (Eukaryota), metagenome (Eukaryota), unidentified (Eukaryota), uncultured eukaryote 548965 (Eukaryota), uncultured stramenopile 549443 (Eukaryota), Trebouxia asymmetrica (Eukaryota), uncultured eukaryote 32619 (Eukaryota), uncultured eukaryote 568848 (Eukaryota), Phaeophila dendroides (Eukaryota), uncultured eukaryote 568048 (Eukaryota), Ulvophyceae sp. (Eukaryota), uncultured eukaryote 568634 (Eukaryota), uncultured marine 569745 (Eukaryota), Dictyota sp. (Eukaryota), Chrysophyceae sp. (Eukaryota), Akkesiphycus lubricum (Eukaryota), Cladophora socialis (Eukaryota), Monas sp. (Eukaryota), Spumella-like flagellate (Eukaryota), Ulva rigida (Eukaryota), uncultured Chlorophyta 706 (Eukaryota), uncultured marine 1201 (Eukaryota), Anurofeca richardsi (Eukaryota), Halothrix ambigua (Eukaryota), Ectocarpus siliculosus (Eukaryota), Ulvella viridis (Eukaryota), Hazenia basiliensis (Eukaryota), Scytosiphon lomentaria (Eukaryota), Vannella sp. (Eukaryota), uncultured marine 572798 (Eukaryota), uncultured stramenopile 572800 (Eukaryota), Saccorhiza polyschides (Eukaryota), Ulvella repens (Eukaryota), uncultured Chlorophyta 572894 (Eukaryota), uncultured eukaryote 572926 (Eukaryota), uncultured eukaryote 573321 (Eukaryota), uncultured eukaryote 573325 (Eukaryota), uncultured stramenopile 573329 (Eukaryota), uncultured stramenopile 573336 (Eukaryota), eukaryotic picoplankton (Eukaryota), uncultured stramenopile 573338 (Eukaryota), uncultured marine 573340 (Eukaryota), uncultured stramenopile 573343 (Eukaryota), uncultured Chlorophyta 573368 (Eukaryota), uncultured stramenopile 573377 (Eukaryota), Peyssonnelia novae-hollandiae (Florideophycidae), uncultured Corallinales 152450 (Florideophycidae), uncultured Corallinales 567854 (Florideophycidae), Peyssonnelia capensis (Florideophycidae), uncultured Corallinales 52775 (Florideophycidae), Renouxia sp. (Florideophycidae), uncultured Corallinales 2575 (Florideophycidae), uncultured Corallinales 32406 (Florideophycidae), Melobesioideae sp. (Florideophycidae), uncultured Corallinales 568586 (Florideophycidae), Cordylecladia erecta (Florideophycidae), Rhodopeltis borealis (Florideophycidae), Antithamnion aglandum (Florideophycidae), Peyssonnelia sp. (Florideophycidae), Gastroclonium pacificum (Florideophycidae), uncultured Corallinales 569753 (Florideophycidae), uncultured eukaryote 570822 (Florideophycidae), uncultured Corallinales 21317 (Florideophycidae), Lithophyllum pustulatum (Florideophycidae), uncultured Corallinales 32421 (Florideophycidae), uncultured Corallinales 64865 (Florideophycidae), uncultured Corallinales 141964 (Florideophycidae), uncultured Corallinales 314848 (Florideophycidae), uncultured Corallinales 325432 (Florideophycidae), uncultured Corallinales 422157 (Florideophycidae), uncultured eukaryote 541841 (Florideophycidae), uncultured Corallinales 570824 (Florideophycidae), uncultured Corallinales 572783 (Florideophycidae), Audouinella hermannii (Florideophycidae), Mesophyllum vancouveriense (Florideophycidae), Aspidiophorus tentaculatus (Gastrotricha), uncultured eukaryote 568949 (Gastrotricha), uncultured eukaryote 572779 (Gastrotricha), uncultured eukaryote 572781 (Gastrotricha), uncultured eukaryote 72 (Labyrinthulomycetes), uncultured marine 2482 (Labyrinthulomycetes), Aplanochytrium kerguelense (Labyrinthulomycetes), uncultured eukaryote 47361 (Labyrinthulomycetes), Labyrinthuloides minuta (Labyrinthulomycetes), uncultured eukaryote 342700 (Labyrinthulomycetes), uncultured eukaryote 71955 (Labyrinthulomycetes), uncultured eukaryote 569081 (Labyrinthulomycetes), uncultured marine 1339 (Labyrinthulomycetes), uncultured eukaryote 4861 (Labyrinthulomycetes), Thraustochytrium sp. (Labyrinthulomycetes), uncultured eukaryote 2623 (Labyrinthulomycetes), Thraustochytriidae sp. (Labyrinthulomycetes), uncultured eukaryote 1117 (Labyrinthulomycetes), Thraustochytrium multirudimentale (Labyrinthulomycetes), Oblongichytrium sp. (Labyrinthulomycetes), uncultured eukaryote 572871 (Labyrinthulomycetes), uncultured eukaryote 573363 (Labyrinthulomycetes), Myozonariinae sp. (Platyhelminthes), Macrostomum tuba (Platyhelminthes), Myozonaria fissipara (Platyhelminthes), Spirastrella sp. (Porifera), Clathrina luteoculcitella (Porifera), Clathrina sp. (Porifera), Clathrina wistariensis (Porifera), Voromonas pontica (Protalveolata), Euduboscquella sp. (Protalveolata)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Mycobacterium sp., Unclassified Piscirickettsiaceae 58203, Unclassified Bacteria 1800, Alteromonas sp., Microbulbifer sp., Unclassified Bacteria 16462, Unclassified Rhodobacteraceae 276, Unclassified Hyphomicrobiaceae 9813, Unclassified Hyphomicrobiaceae 1489, Unclassified Ulvophyceae 27981, Inquilinus sp., Nitrosopumilus sp., Unclassified Bacteria 265473, Unclassified Bacteria 9721, Unclassified Bacteria 10668, Unclassified Bacteria 5367, Unclassified Lachnospiraceae 220739, Unclassified Bacteria 1173, Unclassified Bacteria 390959, Clostridium sp., Unclassified Pseudanabaenaceae 165660, Unclassified Nitrospiraceae 25186, A17 sp., Unclassified Coxiellaceae 390980, Unclassified Bacteria 10172, Unclassified Desulfobacteraceae 122784, Desulfosporosinus meridiei, Unclassified Bacteria 36004, Brevibacillus sp., Unclassified Ulvophyceae 122484, Unclassified Pseudanabaenaceae 193381, Unclassified Bacteria 1596, Unclassified JdFBGBact 3731, Unclassified Nitrospiraceae 9977, Unclassified Bacteria 10830, Hyphomicrobium sp., Desulfococcus sp., Bacillus sp., Unclassified Xenococcaceae 391007, Unclassified Bacteria 791, Aquimarina sp., Unclassified Bacteria 258651, Unclassified Pirellulaceae 112997, Unclassified Rhodospirillaceae 55071, Unclassified Bacteria 122543, Unclassified Pirellulaceae 391041, Gloeobacter sp., Cenarchaeum symbiosum, Unclassified Rhodospirillaceae 56010, Unclassified HTCC2089 248274, Unclassified Clostridiaceae 292655, Unclassified Pirellulaceae 391059, Unclassified Colwelliaceae 717, Unclassified Bacteria 1141, Unclassified Rhodothermaceae 70406, Unclassified Hyphomicrobiaceae 14112, Unclassified Flavobacteriaceae 30384, Alicyclobacillus sp., Unclassified Cenarchaeaceae 31722, Unclassified Bacteria 93586, Unclassified PAUC26f 226302, Unclassified Bacteria 391112, Unclassified Flammeovirgaceae 5837, Unclassified Bacteria 14517, Unclassified Phyllobacteriaceae 54828, Unclassified Bacteria 12806, Unclassified Bacteria 391142, Unclassified Rhodospirillaceae 127075, Unclassified Lachnospiraceae 258011, Unclassified Flavobacteriaceae 266274, Unclassified Pirellulaceae 391174, Unclassified Pirellulaceae 391176, Unclassified Pirellulaceae 977, Unclassified Bacteria 2905, Unclassified Legionellaceae 159100, Unclassified Ulvophyceae 166292, Unclassified Bacteria 195117, Methylosinus sp., Unclassified Legionellaceae 346164, Unclassified Bacteria 391247, Plesiocystis sp., Unclassified Legionellaceae 391254, Unclassified Bacteria 6757, Unclassified Bacteria 126647, Unclassified Flammeovirgaceae 83240, Unclassified MND4 133971, Unclassified Pseudanabaenaceae 391319, Marinobacter sp., Unclassified Desulfobulbaceae 140599, Desulfotomaculum sp., Unclassified Pirellulaceae 391360, Halomicronema sp., Vibrio sp., Unclassified Bacteria 391429, Unclassified Bacteria 2900, Unclassified Pirellulaceae 10371, Unclassified Flavobacteriaceae 35221, Unclassified Bacteria 190319, Legionella sp., Unclassified Bacteria 391491, Unclassified Bacteria 60011, Unclassified C111 141974, Unclassified JdFBGBact 391540, Unclassified JTB38 391541, Unclassified Bacteria 391545, Unclassified Bacteria 391561, Glaciecola sp., Unclassified Bacteria 2152, Unclassified Bacteria 9839, Unclassified Bacteria 144979, Unclassified Rhodospirillaceae 229606, Unclassified Xenococcaceae 254086, Unclassified Bacteria 391637, Unclassified Bacteria 391638, Thalassospira xiamenensis, Unclassified Rhodobacteraceae 830, Unclassified Nitrosomonadaceae 2503, Tepidibacter sp., Unclassified Bacteria 36382, Unclassified Flavobacteriaceae 50638, Methylibium sp., Planctomyces sp., Halostagnicola larsenii, Unclassified Bradyrhizobiaceae 1033, Unclassified Piscirickettsiaceae 25025, Unclassified Bacteria 96705, Unclassified Pirellulaceae 155937, Unclassified Bacteria 236576, Unclassified Pirellulaceae 288768, Unclassified Pirellulaceae 391905, Marinicella sp., Unclassified Piscirickettsiaceae 391915, Muricauda sp., Unclassified Micrococcaceae 154917, Unclassified Cystobacterineae 392131, Unclassified Phyllobacteriaceae 392134, Unclassified Xenococcaceae 392136, Unclassified Pirellulaceae 392143, Alcanivorax sp., Candidatus sp., Unclassified Victivallaceae 190439, Unclassified Bacteria 392409, Unclassified Xenococcaceae 392411, Unclassified Bacteria 392412, Unclassified JdFBGBact 392420, Unclassified Bacteria 949, Rickettsiella sp., Lentisphaera sp., Unclassified Bacteria 36764, Unclassified Haloplasmataceae 71073, Anaerospora sp., Unclassified Xenococcaceae 257773, Unclassified Pseudanabaenaceae 392919, Unclassified Phyllobacteriaceae 392925, Unclassified JTB38 392929, Unclassified Hyphomicrobiaceae 392935, Unclassified Piscirickettsiaceae 392937, Unclassified Bacteria 393145, Sphingomonas sp., Unclassified Rhodocyclaceae 393152, Halorhodospira sp., Unclassified Pirellulaceae 12597, Unclassified Bacteria 137922, Unclassified Bacteria 155446, Unclassified Pseudanabaenaceae 257432, Unclassified Pirellulaceae 328093, Unclassified Cenarchaeaceae 393806, Unclassified A4b 393807, Unclassified Pirellulaceae 393809, Unclassified Pirellulaceae 393813, Unclassified Pirellulaceae 393818, Unclassified Bacteria 393822, Unclassified Rhodospirillaceae 393826, Unclassified Bacteria 393830, Unclassified Rhodospirillaceae 393831, Unclassified Piscirickettsiaceae 393839, Unclassified Piscirickettsiaceae 393840, Unclassified Pirellulaceae 393842, Unclassified Desulfobacteraceae 393847, Unclassified Micromonosporaceae 394219, Unclassified Hyphomicrobiaceae 394230, Unclassified Legionellaceae 394235, Unclassified Legionellaceae 394239, Unclassified Lachnospiraceae 394241, Unclassified Bacteria 10241, Unclassified Colwelliaceae 134357, Unclassified Bacteria 143444, Unclassified Hyphomicrobiaceae 154826, Unclassified Hyphomicrobiaceae 165088, Unclassified Hyphomicrobiaceae 185751, Unclassified Bacteria 197252, Unclassified Hyphomicrobiaceae 258034, Unclassified Piscirickettsiaceae 271041, Unclassified Hyphomicrobiaceae 357585, Unclassified Bacteria 368912, Unclassified Bacteria 368925, Unclassified Desulfobacteraceae 392835, Unclassified Pirellulaceae 395262, Unclassified Desulfobacteraceae 395265, Unclassified Pirellulaceae 395272, Unclassified Pseudanabaenaceae 395274, Unclassified Bacteria 395278, Unclassified Bacteria 395279, Unclassified Rhodospirillaceae 395281, Unclassified Bacteria 395283, Unclassified Pirellulaceae 395287, Unclassified Hyphomicrobiaceae 395290, Unclassified Pirellulaceae 395291, Unclassified Pirellulaceae 395292, Unclassified Hyphomicrobiaceae 395293, Unclassified Bacteria 395294, Unclassified Nitrospiraceae 395295, Unclassified Bacteria 395298, Unclassified Xenococcaceae 395299, Unclassified Xenococcaceae 395300, Unclassified JTB38 395304, Unclassified Rhodospirillaceae 395305, Unclassified Piscirickettsiaceae 395309, Unclassified Bacteria 395310, Unclassified Bacteria 395311, Unclassified Rhodospirillaceae 395312, Unclassified Bacteria 395313, Unclassified Bacteria 395314, Unclassified Bacteria 395315, Unclassified Bacteria 395317, Unclassified Bacteria 395319, Unclassified Bacteria 395320, Unclassified Rhodospirillaceae 395321, Unclassified Bacteria 395328, Unclassified Bacteria 395329, Unclassified Bacteria 395330, Unclassified Bacteria 395331, Unclassified Rhodospirillaceae 395333, Unclassified Rhodospirillaceae 395334, Unclassified Bacteria 395335, Anaerospora hongkongensis, Unclassified Piscirickettsiaceae 395341, Loktanella sp., Unclassified Desulfobulbaceae 395347, Unclassified Bacteria 395353, Unclassified Bacteria 395354, Unclassified Bacteria 395355, Unclassified Piscirickettsiaceae 395356, Unclassified Piscirickettsiaceae 395369, Unclassified Piscirickettsiaceae 395370, Unclassified Piscirickettsiaceae 395376, Unclassified Colwelliaceae 395377, Unclassified Pirellulaceae 395382, Unclassified Bacteria 395384, Unclassified Bacteria 395385, Unclassified Bacteria 395388, Unclassified Bacteria 395389, Unclassified Bacteria 395394, Unclassified PAUC26f 395402, Unclassified Rhodospirillaceae 395404, Unclassified Pirellulaceae 395407, Unclassified Nitrospiraceae 395408, Unclassified Pirellulaceae 395924, Unclassified Rhodobacteraceae 395933, Unclassified Hyphomicrobiaceae 395935, Unclassified Bacteria 395936, Unclassified Rhodobacteraceae 395937, Unclassified Legionellaceae 395948


DNA analysis conducted by AquaBiomics LLC.

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Certificate of Analysis LRS G11.11

Certificate of Analysis: Live Reef Sand, Batch LRS G11.11

lrs.g11.11_Certificate_of_Analysis

    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in a batch of Live Reef Sand. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrs.g11.11
Batch Name g12-15-25
Sample Date 03/20/2026 10:30 AM

Microbial Diversity

This sample contained DNA from 646 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families with 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Nitrosomonadaceae
Type Percent of Community Genus Species
2057 0.02 Unknown Unknown
Cenarchaeaceae
Type Percent of Community Genus Species
73 0.88 Nitrosopumilus Unknown
760 0.71 Nitrosopumilus Unknown
9677 0.60 Nitrosopumilus Unknown
2996 0.35 Nitrosopumilus Unknown
10731 0.31 Unknown Unknown
640 0.30 Nitrosopumilus Unknown
166208 0.30 Unknown Unknown

Nitrite-Oxidizing Bacteria

Nitrospinaceae
Type Percent of Community Genus Species
16966 0.03 Nitrospina Unknown
Nitrospiraceae
Type Percent of Community Genus Species
55498 0.60 Unknown Unknown
392705 0.03 Unknown Unknown
393432 0.02 Unknown Unknown
The nitrifying community in this sample included 12 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marscesens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 910 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families with 3 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Howeina sp. (Arthropoda), Argestigens sp. (Arthropoda), Isobactrus uniscutatus (Arthropoda), Parastenhelia sp. (Arthropoda), Nannopus bulbiseta (Arthropoda), Halacarellus sp. (Arthropoda), Tydeidae gen. (Arthropoda), Scolia hirta (Arthropoda), Nenesidea oligodentata (Arthropoda), Rhombognathus areolatus (Arthropoda), Ameira scotti (Arthropoda), Clibanarius antillensis (Arthropoda), Paramenophia sp. (Arthropoda), Debaryomyces udenii (Ascomycota), Cladosporium sp. (Ascomycota), Saccharomyces uvarum (Ascomycota), Penicillium griseofulvum (Ascomycota), Acremonium chrysogenum (Ascomycota), Malassezia restricta (Basidiomycota), Malassezia globosa (Basidiomycota), Wallemia sebi (Basidiomycota), Stereum hirsutum (Basidiomycota), Trametes versicolor (Basidiomycota), Holtermannia corniformis (Basidiomycota), Neohygrocybe ingrata (Basidiomycota), Trametes hirsuta (Basidiomycota), Galerina marginata (Basidiomycota), Filobasidium floriforme (Basidiomycota), Porpolomopsis lewelliniae (Basidiomycota), Chamaeota sinica (Basidiomycota), uncultured marine 15485 (Cercozoa), Protaspis grandis (Cercozoa), uncultured marine 32863 (Cercozoa), Haplosporidian parasite (Cercozoa), uncultured Rhizaria 71229 (Cercozoa), uncultured Cercozoa 325160 (Cercozoa), uncultured eukaryote 314937 (Cercozoa), marine metagenome (Cercozoa), uncultured Cercozoa 5116 (Cercozoa), Thaumatomastigidae environmental (Cercozoa), Paradinium poucheti (Cercozoa), uncultured marine 573035 (Cercozoa), Esquamula lacrimiformis (Cercozoa), uncultured eukaryote 1354 (Ciliophora), Epicarchesium corlissi (Ciliophora), uncultured eukaryote 138061 (Ciliophora), Kiitricha marina (Ciliophora), Pseudoamphisiella quadrinucleata (Ciliophora), Amphileptus spiculatus (Ciliophora), uncultured eukaryote 569204 (Ciliophora), Zoothamnopsis sinica (Ciliophora), Thigmokeronopsis sp. (Ciliophora), Amphileptus litonotiformis (Ciliophora), Epiclintes auricularis (Ciliophora), Vaginicola sp. (Ciliophora), Melicertum octocostatum (Cnidaria), Eleutheria claparedei (Cnidaria), Diadumene leucolena (Cnidaria), Homophyllia bowerbanki (Cnidaria), Stegella lobata (Cnidaria), Millepora sp. (Cnidaria), Polyorchis haplus (Cnidaria), Nematostella vectensis (Cnidaria), Eudendrium racemosum (Cnidaria), uncultured eukaryote 574029 (Cnidaria), Pandea sp. (Cnidaria), uncultured eukaryote 402670 (Diatomea), uncultured eukaryote 52878 (Diatomea), Seminavis sp. (Diatomea), Navicula arenaria (Diatomea), uncultured eukaryote 6222 (Diatomea), Navicula reinhardtii (Diatomea), uncultured marine 15228 (Diatomea), Psammodictyon constrictum (Diatomea), Rhaphoneis belgicae (Diatomea), uncultured stramenopile 267345 (Diatomea), uncultured eukaryote 308578 (Diatomea), Pleurosigma sp. (Diatomea), uncultured marine 6226 (Diatomea), uncultured eukaryote 206394 (Diatomea), Amphora sp. (Diatomea), uncultured marine 568613 (Diatomea), uncultured marine 405198 (Diatomea), Rhaphoneis sp. (Diatomea), uncultured eukaryote 568614 (Diatomea), uncultured eukaryote 569007 (Diatomea), uncultured marine 570400 (Diatomea), uncultured marine 569566 (Diatomea), Phaeodactylum tricornutum (Diatomea), uncultured eukaryote 152348 (Diatomea), Craticula pseudocitrus (Diatomea), uncultured marine 406296 (Diatomea), Bacillariophyta sp. (Diatomea), Nitzschia longissima (Diatomea), Stauroneis kriegeri (Diatomea), Pseudogomphonema sp. (Diatomea), uncultured eukaryote 56 (Diatomea), uncultured eukaryote 171851 (Diatomea), uncultured eukaryote 309199 (Diatomea), uncultured eukaryote 550438 (Diatomea), uncultured eukaryote 568743 (Diatomea), uncultured marine 569421 (Diatomea), Cocconeis cf. (Diatomea), uncultured stramenopile 571181 (Diatomea), Paralia sulcata (Diatomea), Nitzschia sigma (Diatomea), uncultured marine 572455 (Diatomea), uncultured marine 573895 (Diatomea), uncultured stramenopile 573906 (Diatomea), Craticula molestiformis (Diatomea), uncultured marine 573939 (Diatomea), uncultured eukaryote 573985 (Diatomea), Craticula cuspidata (Diatomea), uncultured marine 574045 (Diatomea), Haslea ostrearia (Diatomea), uncultured marine 1113 (Diatomea), uncultured marine 2195 (Diatomea), uncultured marine 106781 (Diatomea), uncultured marine 186955 (Diatomea), uncultured marine 426064 (Diatomea), uncultured eukaryote 471673 (Diatomea), uncultured marine 510447 (Diatomea), uncultured eukaryote 571188 (Diatomea), uncultured eukaryote 573020 (Diatomea), uncultured marine 573021 (Diatomea), uncultured marine 573030 (Diatomea), uncultured marine 573036 (Diatomea), uncultured marine 573038 (Diatomea), uncultured marine 573894 (Diatomea), Cymatosira belgica (Diatomea), uncultured stramenopile 573907 (Diatomea), uncultured eukaryote 573909 (Diatomea), uncultured marine 573913 (Diatomea), Psammodictyon panduriforme (Diatomea), uncultured eukaryote 573934 (Diatomea), Cocconeis stauroneiformis (Diatomea), uncultured eukaryote 574012 (Diatomea), uncultured stramenopile 574019 (Diatomea), Paragymnodinium shiwhaense (Dinoflagellata), Heterocapsa triquetra (Dinoflagellata), uncultured eukaryote 434933 (Dinoflagellata), uncultured eukaryote 570403 (Dinoflagellata), Alexandrium insuetum (Dinoflagellata), Ostreopsis cf. (Dinoflagellata), Symbiodinium sp. (Dinoflagellata), uncultured marine 574086 (Dinoflagellata), uncultured eukaryote 422 (Dinoflagellata), uncultured eukaryote 61173 (Dinoflagellata), uncultured eukaryote 206378 (Dinoflagellata), Symbiodinium minutum (Dinoflagellata), uncultured eukaryote 573986 (Dinoflagellata), Cryptoperidiniopsis brodyi (Dinoflagellata), uncultured eukaryote 574085 (Dinoflagellata), uncultured eukaryote 268562 (Euglenozoa), Notosolenus urceolatus (Euglenozoa), Diplonema sp. (Euglenozoa), uncultured eukaryote 572379 (Euglenozoa), Paraphysomonas imperforata (Eukaryota), Symbiochloris sp. (Eukaryota), uncultured eukaryote 35940 (Eukaryota), Akkesiphycus lubricum (Eukaryota), Paramoeba eilhardi (Eukaryota), Ulvella repens (Eukaryota), Ulvella viridis (Eukaryota), uncultured stramenopile 571177 (Eukaryota), Vannella sp. (Eukaryota), uncultured eukaryote 514678 (Eukaryota), Paramoeba branchiphila (Eukaryota), uncultured stramenopile 573886 (Eukaryota), Gloeotilopsis planctonica (Eukaryota), Gungnir sp. (Eukaryota), uncultured eukaryote 573998 (Eukaryota), Stichococcus jenerensis (Eukaryota), uncultured eukaryote 574017 (Eukaryota), Ulvophyceae sp. (Eukaryota), Scytosiphon lomentaria (Eukaryota), Anurofeca richardsi (Eukaryota), uncultured eukaryote 568048 (Eukaryota), Phaeophila dendroides (Eukaryota), uncultured stramenopile 571178 (Eukaryota), uncultured eukaryote 573882 (Eukaryota), eukaryotic picoplankton (Eukaryota), Coccoid pelagophyte (Eukaryota), Ectocarpus siliculosus (Eukaryota), uncultured Corallinales 152450 (Florideophycidae), uncultured Corallinales 52775 (Florideophycidae), Peyssonnelia novae-hollandiae (Florideophycidae), Lithophyllum pustulatum (Florideophycidae), Colaconema proskaueri (Florideophycidae), uncultured Corallinales 568586 (Florideophycidae), uncultured Corallinales 332853 (Florideophycidae), uncultured Corallinales 541886 (Florideophycidae), uncultured Corallinales 573967 (Florideophycidae), uncultured Corallinales 573973 (Florideophycidae), Rhodopeltis borealis (Florideophycidae), Melobesioideae sp. (Florideophycidae), uncultured Corallinales 574039 (Florideophycidae), uncultured Corallinales 574041 (Florideophycidae), Peyssonnelia capensis (Florideophycidae), Synarthrophyton patena (Florideophycidae), uncultured Corallinales 141964 (Florideophycidae), uncultured Corallinales 570824 (Florideophycidae), uncultured eukaryote 574037 (Florideophycidae), Naccaria wiggii (Florideophycidae), uncultured Corallinales 574044 (Florideophycidae), uncultured Corallinales 574048 (Florideophycidae), uncultured Corallinales 574049 (Florideophycidae), Mesophyllum vancouveriense (Florideophycidae), uncultured marine 2482 (Labyrinthulomycetes), Aplanochytrium kerguelense (Labyrinthulomycetes), uncultured eukaryote 72 (Labyrinthulomycetes), uncultured eukaryote 71955 (Labyrinthulomycetes), Oblongichytrium sp. (Labyrinthulomycetes), uncultured eukaryote 269 (Labyrinthulomycetes), uncultured marine 1339 (Labyrinthulomycetes), Thraustochytrium multirudimentale (Labyrinthulomycetes), Aplanochytrium sp. (Labyrinthulomycetes), uncultured eukaryote 190854 (Labyrinthulomycetes), Labyrinthuloides minuta (Labyrinthulomycetes), uncultured eukaryote 324820 (Nematozoa), Camacolaimus sp. (Nematozoa), Syringolaimus sp. (Nematozoa), Leptolaimus sp. (Nematozoa), uncultured eukaryote 573863 (Nematozoa), Hexapterella gentianoides (Phragmoplastophyta), Prunus persica (Phragmoplastophyta), Cucumis sativus (Phragmoplastophyta), Aphroceras sp. (Porifera), Leuconia nivea (Porifera), Pleraplysilla spinifera (Porifera), uncultured eukaryote 97927 (Protalveolata), uncultured eukaryote 569333 (Protalveolata), uncultured eukaryote 572479 (Protalveolata), uncultured eukaryote 1059 (uncultured), uncultured eukaryote 569221 (uncultured), uncultured eukaryote 119691 (uncultured), uncultured eukaryote 569910 (uncultured), uncultured eukaryote 572464 (uncultured), uncultured alveolate 573905 (uncultured), uncultured eukaryote 573972 (uncultured), metagenome (uncultured)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Mycobacterium sp., Photobacterium angustum, Unclassified Bacteria 171772, Unclassified Bacteria 99482, Unclassified Bacteria 10241, Unclassified Bacteria 26049, Unclassified Bacteria 58502, Unclassified Bacteria 9721, Unclassified Piscirickettsiaceae 390907, Propionibacterium acnes, Unclassified Legionellaceae 390918, Nitrosopumilus sp., Unclassified Bacteria 155446, Xenococcus sp., Microbulbifer sp., Unclassified Bacteria 248316, Unclassified Bacteria 16462, Corynebacterium kroppenstedtii, Desulfococcus sp., Unclassified Nitrospiraceae 55498, Unclassified Xenococcaceae 43854, Unclassified Legionellaceae 220528, Unclassified Bacteria 12806, Unclassified Bacteria 220539, Unclassified Bacteria 226262, Unclassified Bacteria 93586, Unclassified Coxiellaceae 359934, Unclassified Legionellaceae 363550, Vibrio sp., Unclassified Bacteria 27069, Unclassified Bacteria 245270, Clostridium sp., Unclassified Hyphomicrobiaceae 1489, Unclassified Cenarchaeaceae 10731, Unclassified Xenococcaceae 132144, Unclassified Bradyrhizobiaceae 1033, Unclassified Rhodobacteraceae 1492, Unclassified Lachnospiraceae 110488, Unclassified Cenarchaeaceae 166208, Unclassified OM60 235152, Unclassified Pirellulaceae 4596, Unclassified Bacteria 10172, Unclassified Thiotrichaceae 40459, Unclassified Flammeovirgaceae 88338, Unclassified Verrucomicrobiaceae 287095, Unclassified Saprospiraceae 391087, Unclassified Bacteria 25504, Staphylococcus aureus, Unclassified JdFBGBact 1704, Unclassified Bacteria 67693, Unclassified Bacteria 100231, Unclassified Pirellulaceae 391113, Unclassified Bacteria 74194, Unclassified Bacteria 195054, Unclassified Bacteria 391127, Unclassified Legionellaceae 28147, Unclassified Bacteria 81096, Unclassified Bacteria 391158, Unclassified Bacteria 30, Inquilinus sp., Unclassified Coxiellaceae 172750, Unclassified Criblamydiaceae 391204, Unclassified Hyphomicrobiaceae 105, Unclassified Bacteria 99471, Unclassified Flavobacteriaceae 109085, Unclassified Bacteria 391221, Unclassified Bacteria 791, Unclassified koll13 93630, Unclassified Lachnospiraceae 220739, Unclassified Phyllobacteriaceae 391287, Unclassified Phyllobacteriaceae 236, Unclassified Bacteria 36764, Unclassified Simkaniaceae 186909, Unclassified Bacteria 391305, Unclassified Piscirickettsiaceae 391307, Unclassified Bacteria 391326, Unclassified Bacteria 9651, Psychrobacter sp., Unclassified Rhodospirillaceae 391369, Unclassified Clostridiaceae 391370, Unclassified Bacteria 5750, Unclassified Flavobacteriaceae 33271, Unclassified Bacteria 67898, Unclassified Piscirickettsiaceae 237752, Unclassified Rhodobacteraceae 694, Streptococcus sp., Unclassified Legionellaceae 117161, Unclassified Bacteria 391452, Tenacibaculum sp., Thiothrix sp., Methylotenera mobilis, Unclassified Bacteria 1311, Unclassified Bacteria 10790, Aquimarina sp., Unclassified Piscirickettsiaceae 67508, Unclassified [Amoebophilaceae] 93818, Unclassified Bacteria 391605, Unclassified Piscirickettsiaceae 391607, Unclassified Oxalobacteraceae 653, Unclassified Rickettsiaceae 32165, Coxiella sp., Unclassified Bacteria 274385, Unclassified Phyllobacteriaceae 364370, Unclassified Thiotrichaceae 391699, Unclassified Bacteria 391752, Halomonas sp., Unclassified Flavobacteriaceae 177, Nocardia sp., Unclassified Flammeovirgaceae 83240, Unclassified wb1_P06 102604, Unclassified Bacteria 391843, Unclassified Bacteria 391847, Unclassified Hyphomonadaceae 391849, Unclassified Flammeovirgaceae 391858, Unclassified Pirellulaceae 391925, Unclassified Rhodospirillaceae 391927, Unclassified Hyphomicrobiaceae 391929, Unclassified Hyphomicrobiaceae 391930, Corynebacterium sp., Unclassified Bacteria 13895, Unclassified Pirellulaceae 14949, Unclassified Bacteria 159273, Unclassified Bacteria 245978, Unclassified Thiotrichaceae 270668, Unclassified Saprospiraceae 392045, Unclassified Bacteria 392050, Unclassified Flammeovirgaceae 392053, Photobacterium sp., Unclassified OM60 392057, Unclassified Bacteria 7237, Unclassified Lentisphaeraceae 16575, Unclassified Bacteria 68240, Unclassified Cryomorphaceae 75413, Unclassified Bacteria 147169, Methylobacterium adhaesivum, Unclassified Bacteria 226006, Unclassified Bacteria 248176, Unclassified Comamonadaceae 376774, Unclassified [Amoebophilaceae] 392312, Unclassified Bacteria 392314, Unclassified Bacteria 392315, Unclassified Bacteria 392318, Unclassified Bacteria 392451, Leucothrix sp., Lactococcus sp., Unclassified Bacteria 6567, Nitrospina sp., Unclassified Rhodobacteraceae 122626, Epulopiscium sp., Unclassified Bacteria 165851, Unclassified JdFBGBact 171953, Unclassified Nitrospiraceae 392705, Unclassified Phyllobacteriaceae 392989, Unclassified Flavobacteriaceae 392992, Unclassified Syntrophobacteraceae 392994, Fusobacterium sp., Unclassified Bacteria 77, Unclassified Nitrosomonadaceae 2057, Persicirhabdus sp., Unclassified Hyphomicrobiaceae 185751, Unclassified wb1_P06 237271, Unclassified lheB3-7 237291, Unclassified Hyphomicrobiaceae 253025, Unclassified Thermoactinomycetaceae 253831, Planctomyces sp., Unclassified Bacteria 393430, Unclassified Nitrospiraceae 393432, Unclassified Piscirickettsiaceae 393441, Unclassified Flammeovirgaceae 393443, Unclassified Pirellulaceae 393930, Unclassified Verrucomicrobiaceae 393942, Unclassified Bacteria 393944, Unclassified Hyphomicrobiaceae 393945, Unclassified Criblamydiaceae 393949, Unclassified Bacteria 393951, Unclassified Bacteria 393952, Unclassified Piscirickettsiaceae 1261, Citromicrobium sp., Unclassified Ectothiorhodospiraceae 106526, Salinisphaera sp., Unclassified Thiotrichaceae 225032, Unclassified Thiotrichaceae 348899, Unclassified Hyphomicrobiaceae 357585, Unclassified Rhodobacteraceae 360058, Unclassified Bacteria 386933, Unclassified Piscirickettsiaceae 394682, Unclassified Piscirickettsiaceae 394684, Unclassified Pirellulaceae 394687, Unclassified Bacteria 394691, Unclassified Bacteria 394692, Unclassified Bacteria 394693, Unclassified Bacteria 394699, Unclassified Piscirickettsiaceae 394711, Unclassified OM60 394712, Unclassified Bacteria 394716, Unclassified Pirellulaceae 394720, Unclassified Xenococcaceae 394725, Unclassified Bacteria 394727, Unclassified Bacteria 394733, Unclassified Flammeovirgaceae 394742, Unclassified Ectothiorhodospiraceae 394745, Unclassified Ectothiorhodospiraceae 394746, Unclassified OM60 394752, Unclassified Bacteria 394753, Unclassified Bacteria 394754, Unclassified Thiotrichaceae 394755, Unclassified Bacteria 394759, Unclassified Ectothiorhodospiraceae 394767, Unclassified Piscirickettsiaceae 394776, Unclassified Bacteria 394780, Unclassified Bacteria 394782, Unclassified Bacteria 394784, Unclassified Bacteria 395531, Unclassified Rickettsiaceae 395532, Unclassified Rhodobacteraceae 395537, Unclassified Simkaniaceae 395543, Unclassified [Amoebophilaceae] 395551, Clostridiisalibacter sp.


DNA analysis conducted by AquaBiomics LLC.

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Certificate of Analysis LRR G11.21

Certificate of Analysis: Live Reef Rubble, Batch LRR G11.21

lrr.g11.21_Certificate_of_Analysis

    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in and on a batch of Live Reef Rubble. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrr.g11.21
Batch Name g12-15-25
Sample Date 03/20/2026 10:30 AM

Microbial Diversity

This sample contained DNA from 487 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Nitrosomonadaceae
Type Percent of Community Genus Species
2503 0.08 Unknown Unknown
Nitrososphaeraceae
Type Percent of Community Genus Species
4288 0.39 Candidatus Unknown
Cenarchaeaceae
Type Percent of Community Genus Species
73 1.72 Nitrosopumilus Unknown
108976 1.41 Nitrosopumilus Unknown
9677 1.16 Nitrosopumilus Unknown
3535 1.06 Cenarchaeum symbiosum
34770 0.41 Unknown Unknown

Nitrite-Oxidizing Bacteria

Nitrospiraceae
Type Percent of Community Genus Species
2912 1.74 Unknown Unknown
The nitrifying community in this sample included 8 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marcescens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 379 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Terebella lapidaria (Annelida), Grassleia cf. (Annelida), Sabellastarte sp. (Annelida), Dinophilus gyrociliatus (Annelida), Polycirrus carolinensis (Annelida), Apomatus voightae (Annelida), uncultured eukaryote 567935 (Apicomplexa), uncultured eukaryote 568305 (Apicomplexa), Lankesteria hesperidiiformis (Apicomplexa), Artemia salina (Arthropoda), Mysis oculata (Arthropoda), Friedmanniomyces simplex (Ascomycota), Penicillium griseofulvum (Ascomycota), Cladosporium sp. (Ascomycota), Bagnisiella examinans (Ascomycota), Filobasidium floriforme (Basidiomycota), Malassezia restricta (Basidiomycota), Wallemia sebi (Basidiomycota), Stropharia ambigua (Basidiomycota), Neohygrocybe ingrata (Basidiomycota), uncultured marine 32863 (Cercozoa), Paradinium poucheti (Cercozoa), uncultured marine 15485 (Cercozoa), Haplosporidian parasite (Cercozoa), marine metagenome (Cercozoa), Philaster sinensis (Ciliophora), Dysteria pectinata (Ciliophora), Olindias phosphorica (Cnidaria), Eudendrium racemosum (Cnidaria), uncultured archaeon 569189 (Crenarchaeota), uncultured archaeon 83350 (Crenarchaeota), uncultured marine 141668 (Diatomea), Amphora sp. (Diatomea), Navicula reinhardtii (Diatomea), uncultured stramenopile 569751 (Diatomea), Pseudostaurosira elliptica (Diatomea), uncultured eukaryote 6222 (Diatomea), uncultured marine 6945 (Diatomea), Haslea ostrearia (Diatomea), uncultured eukaryote 574142 (Diatomea), Pfiesteria-like sp. (Dinoflagellata), Heterocapsa triquetra (Dinoflagellata), Symbiodinium sp. (Dinoflagellata), uncultured eukaryote 568724 (Euglenozoa), Diplonema sp. (Euglenozoa), Paraphysomonas imperforata (Eukaryota), Trebouxia asymmetrica (Eukaryota), uncultured marine 1201 (Eukaryota), uncultured eukaryote 568634 (Eukaryota), Rhinomonas pauca (Eukaryota), Scenedesmus sp. (Eukaryota), Ulvophyceae sp. (Eukaryota), Akkesiphycus lubricum (Eukaryota), Ulvella viridis (Eukaryota), Phaeophila dendroides (Eukaryota), uncultured stramenopile 573127 (Eukaryota), Scytosiphon lomentaria (Eukaryota), Peyssonnelia novae-hollandiae (Florideophycidae), Lithophyllum pustulatum (Florideophycidae), uncultured Corallinales 32406 (Florideophycidae), uncultured Corallinales 21317 (Florideophycidae), Peyssonnelia sp. (Florideophycidae), uncultured Corallinales 567854 (Florideophycidae), Peyssonnelia capensis (Florideophycidae), uncultured Corallinales 32421 (Florideophycidae), Renouxia sp. (Florideophycidae), Gastroclonium pacificum (Florideophycidae), uncultured Corallinales 325121 (Florideophycidae), uncultured Corallinales 32614 (Florideophycidae), uncultured Corallinales 52775 (Florideophycidae), uncultured Corallinales 207352 (Florideophycidae), uncultured Corallinales 337654 (Florideophycidae), uncultured Corallinales 568551 (Florideophycidae), uncultured Corallinales 152450 (Florideophycidae), uncultured Corallinales 569155 (Florideophycidae), uncultured Corallinales 142157 (Florideophycidae), uncultured Corallinales 325432 (Florideophycidae), uncultured Corallinales 326013 (Florideophycidae), uncultured Corallinales 64865 (Florideophycidae), Melobesioideae sp. (Florideophycidae), uncultured Corallinales 572506 (Florideophycidae), Synarthrophyton patena (Florideophycidae), uncultured Corallinales 2575 (Florideophycidae), uncultured Corallinales 141964 (Florideophycidae), uncultured Corallinales 147857 (Florideophycidae), uncultured Corallinales 199057 (Florideophycidae), uncultured Corallinales 403484 (Florideophycidae), uncultured Corallinales 404728 (Florideophycidae), uncultured Corallinales 422157 (Florideophycidae), Mesophyllum vancouveriense (Florideophycidae), uncultured Corallinales 568586 (Florideophycidae), uncultured Corallinales 569753 (Florideophycidae), Sonderopelta coriacea (Florideophycidae), Pachymenia cf. (Florideophycidae), uncultured Corallinales 574130 (Florideophycidae), Lithothamnion glaciale (Florideophycidae), uncultured Corallinales 574135 (Florideophycidae), uncultured Corallinales 574136 (Florideophycidae), uncultured Corallinales 574139 (Florideophycidae), uncultured eukaryote 72 (Labyrinthulomycetes), Aplanochytrium kerguelense (Labyrinthulomycetes), uncultured marine 2482 (Labyrinthulomycetes), uncultured eukaryote 518748 (Labyrinthulomycetes), Chaetopleura apiculata (Mollusca), Turbo cornutus (Mollusca), Spirastrella sp. (Porifera)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Unclassified Desulfobacteraceae 122784, Unclassified Nitrospiraceae 2912, Nitrosopumilus sp., Unclassified Piscirickettsiaceae 55043, Unclassified Bacteria 5367, Inquilinus sp., Unclassified Piscirickettsiaceae 107004, Unclassified Bacteria 55095, Desulfococcus sp., Cenarchaeum symbiosum, Unclassified Hyphomicrobiaceae 1489, Unclassified Bacteria 218750, Unclassified Bacteria 1800, Unclassified Bradyrhizobiaceae 1033, Unclassified Bacteria 36004, Unclassified Bacteria 70287, Unclassified Piscirickettsiaceae 106987, Unclassified Pseudanabaenaceae 165660, Unclassified OM60 181898, Unclassified Bacteria 391000, Unclassified JdFBGBact 1704, Unclassified Pirellulaceae 391006, Unclassified Hyphomicrobiaceae 185751, Unclassified Rhodospirillaceae 55071, Unclassified Desulfobacteraceae 244808, Unclassified Pirellulaceae 391039, Unclassified Bacteria 16462, Unclassified Bacteria 67864, A17 sp., Unclassified Bacteria 391055, Unclassified Cenarchaeaceae 34770, Candidatus sp., Microbulbifer sp., Unclassified Clostridiaceae 292655, Unclassified Pirellulaceae 391088, Unclassified Flavobacteriaceae 30384, Clostridium sp., Unclassified Bacteria 201584, Unclassified Bacteria 391108, Unclassified Bacteria 235111, Alteromonas sp., Unclassified Bacteria 391170, Unclassified PAUC26f 391197, Thalassomonas sp., Unclassified Microbacteriaceae 241837, Unclassified Bacteria 334125, Mycobacterium sp., Unclassified Bacteria 391279, Unclassified Bacteria 5871, Unclassified Bacteria 126647, Unclassified Ulvophyceae 195264, Unclassified Peptostreptococcaceae 165872, Unclassified Coxiellaceae 66758, Planctomyces sp., Unclassified C111 15628, Unclassified Bacteria 391458, Unclassified Bacteria 9129, Unclassified Bacteria 9839, Unclassified Lachnospiraceae 220739, Unclassified Bacteria 245749, Unclassified Bacteria 391527, Unclassified Bacteria 391528, Unclassified Rhodobacteraceae 391530, Unclassified Verrucomicrobiaceae 35156, Unclassified Bacteria 63334, Staphylococcus aureus, Methylobacterium sp., Roseivirga sp., Unclassified Flammeovirgaceae 220481, Unclassified Bacteria 391720, Unclassified Syntrophobacteraceae 13230, Unclassified Saprospiraceae 67943, Unclassified Bacteria 172704, Unclassified Syntrophobacteraceae 194097, Unclassified Xenococcaceae 211113, Unclassified Desulfobacteraceae 368943, Unclassified Bacteria 391887, Unclassified Nitrosomonadaceae 2503, Unclassified Pirellulaceae 8175, Halomicronema sp., Unclassified Pseudanabaenaceae 250788, Unclassified Rhodospirillaceae 392092, Unclassified Piscirickettsiaceae 392095, Unclassified Flavobacteriaceae 392096, Unclassified Bacteria 392097, Unclassified Bacteria 359, Unclassified Bacillaceae 6949, Unclassified Piscirickettsiaceae 232152, Unclassified Piscirickettsiaceae 268846, Verrucomicrobium sp., Unclassified Rhodobacteraceae 392357, Unclassified Bacteria 392359, Unclassified Bacteria 392361, Unclassified Bacteria 392363, Unclassified Piscirickettsiaceae 392366, Unclassified Bacteria 392367, Bacillus sp., Unclassified Bacteria 392501, Phormidium sp., Unclassified Bacteria 1039, Unclassified Oceanospirillaceae 1193, Unclassified Bacteria 1889, Unclassified Pirellulaceae 19546, Unclassified Bacteria 60011, Balneola sp., Unclassified Bacteria 259418, Unclassified Bacteria 267572, Unclassified Pirellulaceae 392810, Unclassified Pseudanabaenaceae 392815, Unclassified Desulfobacteraceae 392826, Unclassified Bacteria 392830, Unclassified Bacteria 392831, Unclassified OM60 392833, Unclassified Bacteria 392834, Unclassified Flammeovirgaceae 392836, Unclassified Bacteria 392838, Unclassified PAUC26f 392839, Methylibium sp., Herbaspirillum sp., Unclassified Rhodospirillaceae 4370, SC3-56 sp., Unclassified Pirellulaceae 346334, Unclassified Desulfobacteraceae 392835, Unclassified C111 393610, Unclassified C111 393611, Unclassified Rhodospirillaceae 393615, Unclassified Bacteria 393618, Unclassified Bacteria 393625, Unclassified Hyphomicrobiaceae 393627, Unclassified Hyphomicrobiaceae 393634, Unclassified Bacteria 393635, Unclassified Piscirickettsiaceae 393637, Unclassified Rhodospirillaceae 393639, Unclassified Bacteria 393640, Unclassified Bacteria 393641, Unclassified Bacteria 393642, Unclassified Bacteria 393643, Unclassified Bacteria 393645, Unclassified Flammeovirgaceae 393653, Unclassified Bacteria 393658, Unclassified Desulfobacteraceae 393662, Unclassified Hyphomicrobiaceae 394074, Unclassified JdFBGBact 10625, Unclassified Piscirickettsiaceae 266086, Unclassified Flavobacteriaceae 366995, Unclassified Pirellulaceae 394923, Unclassified Piscirickettsiaceae 394924, Unclassified JdFBGBact 394928, Unclassified Pirellulaceae 394929, Unclassified OM60 394933, Unclassified Rhodospirillaceae 394937, Unclassified Rhodospirillaceae 394939, Unclassified Piscirickettsiaceae 394943, Unclassified Bacteria 394944, Unclassified Bacteria 394953, Unclassified Hyphomicrobiaceae 394954, Unclassified Bacteria 394955, Unclassified Bacteria 394961, Unclassified Pseudanabaenaceae 394963, Unclassified Hyphomicrobiaceae 394964, Unclassified Rhodospirillaceae 394967, Unclassified Bacteria 394971, Unclassified Bacteria 394974, Unclassified Bacteria 394975, Unclassified Bacteria 394976, Unclassified Bacteria 394977, Unclassified Bacteria 394979, Unclassified Bacteria 394980, Unclassified Bacteria 394981, Unclassified Bacteria 394982, Unclassified Bacteria 394983, Unclassified Bacteria 394984, Unclassified Bacteria 394987, Unclassified Bacteria 394991, Unclassified Rhodobacteraceae 394993, Unclassified Rhodospirillaceae 394994, Unclassified Rhodospirillaceae 394995, Unclassified Bacteria 394997, Unclassified Rhodobacteraceae 395001, Unclassified Flammeovirgaceae 395006, Unclassified Bacteria 395007, Unclassified Bacteria 395013, Unclassified Bacteria 395014, Unclassified Bacteria 395015, Unclassified Piscirickettsiaceae 395024, Unclassified Piscirickettsiaceae 395025, Unclassified Piscirickettsiaceae 395026, Unclassified Piscirickettsiaceae 395027, Unclassified Bacteria 395028, Unclassified Pseudanabaenaceae 395029, Unclassified Bacteria 395032, Unclassified Rhodospirillaceae 395033, Unclassified Pirellulaceae 395044, Unclassified Clostridiaceae 395046


DNA analysis conducted by AquaBiomics LLC.

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Certificate of Analysis LRS G11.3

Certificate of Analysis: Live Reef Sand, Batch LRS G11.3

lrs.g11.3_Certificate_of_Analysis

    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in a batch of Live Reef Sand. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrs.g11.3
Batch Name g12-15-25
Sample Date 2/12/26 9:20 AM

Microbial Diversity

This sample contained DNA from 947 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families with 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Nitrosomonadaceae
Type Percent of Community Genus Species
2057 0.13 Unknown Unknown
104582 0.06 Unknown Unknown
Nitrososphaeraceae
Type Percent of Community Genus Species
4288 0.06 Candidatus Unknown
Cenarchaeaceae
Type Percent of Community Genus Species
640 3.95 Nitrosopumilus Unknown
73 0.67 Nitrosopumilus Unknown
9677 0.61 Nitrosopumilus Unknown
31722 0.54 Unknown Unknown
2996 0.24 Nitrosopumilus Unknown
74696 0.15 Cenarchaeum symbiosum

Nitrite-Oxidizing Bacteria

Nitrospiraceae
Type Percent of Community Genus Species
55498 0.28 Unknown Unknown
25423 0.09 Unknown Unknown
365137 0.05 Unknown Unknown
The nitrifying community in this sample included 12 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marscesens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 1214 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families with 3 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

uncultured eukaryote 548630 (Apicomplexa), Gregarinidae sp. (Apicomplexa), uncultured eukaryote 549143 (Apicomplexa), Selenidium pygospionis (Apicomplexa), Selenidium sp. (Apicomplexa), Howeina sp. (Arthropoda), Acaromantis vespucioi (Arthropoda), Artemia salina (Arthropoda), Ophiosphaerella herpotricha (Ascomycota), Humulus lupulus (Ascomycota), Aspergillus cristatus (Ascomycota), Curvularia kusanoi (Ascomycota), Stenella araguata (Ascomycota), Debaryomyces udenii (Ascomycota), Cucurbitaria berberidis (Ascomycota), Wallemia sebi (Basidiomycota), Psathyrella candolleana (Basidiomycota), Nidula niveotomentosa (Basidiomycota), Cystofilobasidium infirmominiatum (Basidiomycota), Cyphobasidium hypogymniicola (Basidiomycota), Neohygrocybe ingrata (Basidiomycota), Paulinella chromatophora (Cercozoa), marine metagenome (Cercozoa), Corythionella minima (Cercozoa), uncultured eukaryote 548798 (Cercozoa), Gromia oviformis (Cercozoa), uncultured marine 549185 (Cercozoa), uncultured eukaryote 549014 (Cercozoa), uncultured marine 15485 (Cercozoa), uncultured Rhizaria 163170 (Cercozoa), uncultured eukaryote 314937 (Cercozoa), Paradinium sp. (Cercozoa), Minorisa sp. (Cercozoa), uncultured eukaryote 5222 (Cercozoa), uncultured eukaryote 549865 (Cercozoa), uncultured eukaryote 278122 (Cercozoa), Reckertia gemma (Cercozoa), Pseudopirsonia mucosa (Cercozoa), uncultured eukaryote 550850 (Cercozoa), Allas diplophysa (Cercozoa), uncultured Rhizaria 552907 (Cercozoa), uncultured Cercozoa 552969 (Cercozoa), uncultured marine 553012 (Cercozoa), Protaspis grandis (Cercozoa), uncultured Cercozoa 1180 (Cercozoa), Paradinium poucheti (Cercozoa), uncultured eukaryote 21339 (Cercozoa), uncultured Cercozoa 54890 (Cercozoa), Gymnophrys sp. (Cercozoa), Cyranomonas australis (Cercozoa), uncultured marine 549447 (Cercozoa), uncultured Rhizaria 551419 (Cercozoa), uncultured Rhizaria 551420 (Cercozoa), uncultured Cercozoa 552740 (Cercozoa), uncultured eukaryote 552759 (Cercozoa), Cyphoderia littoralis (Cercozoa), uncultured eukaryote 552791 (Cercozoa), uncultured eukaryote 552870 (Cercozoa), uncultured marine 553027 (Cercozoa), metagenome (Cercozoa), uncultured Cercozoa 553944 (Cercozoa), uncultured Rhizophlyctis 56246 (Chytridiomycota), Chytridium polysiphoniae (Chytridiomycota), uncultured fungus 550318 (Chytridiomycota), uncultured fungus 548900 (Chytridiomycota), Eutintinnus cf. (Ciliophora), Glauconema trihymene (Ciliophora), metagenome (Ciliophora), Heterohartmannula fangi (Ciliophora), Vaginicola sp. (Ciliophora), uncultured eukaryote 267409 (Ciliophora), Strombidinopsis batos (Ciliophora), Euplotes sp. (Ciliophora), uncultured marine 1815 (Ciliophora), Phialina salinarum (Ciliophora), Paracineta limbata (Ciliophora), Cinetochilum ovale (Ciliophora), Loxophyllum utriculariae (Ciliophora), uncultured eukaryote 552861 (Ciliophora), Pseudokeronopsis carnea (Ciliophora), Protocruzia adherens (Ciliophora), uncultured eukaryote 514669 (Ciliophora), Protogastrostyla sterkii (Ciliophora), uncultured eukaryote 549177 (Ciliophora), Pseudoamphisiella quadrinucleata (Ciliophora), Vampyrophrya pelagica (Ciliophora), uncultured Chytridiomycota 422973 (Cryptomycota), uncultured fungus 7012 (Cryptomycota), uncultured eukaryote 553928 (Cryptomycota), uncultured eukaryote 198850 (Diatomea), Psammodictyon constrictum (Diatomea), Thalassiosira hendeyi (Diatomea), Rhaphoneis sp. (Diatomea), uncultured eukaryote 6222 (Diatomea), uncultured eukaryote 308578 (Diatomea), Odontella aurita (Diatomea), Haslea spicula (Diatomea), uncultured marine 152637 (Diatomea), Haslea ostrearia (Diatomea), Paralia sulcata (Diatomea), uncultured eukaryote 548857 (Diatomea), uncultured stramenopile 142135 (Diatomea), Biddulphia tridens (Diatomea), Pseudogomphonema sp. (Diatomea), Cocconeis cf. (Diatomea), uncultured stramenopile 153550 (Diatomea), uncultured marine 15228 (Diatomea), Navicula arenaria (Diatomea), uncultured marine 152470 (Diatomea), uncultured marine 548912 (Diatomea), Cymatosira belgica (Diatomea), Amphora cf. (Diatomea), uncultured marine 549861 (Diatomea), uncultured eukaryote 549862 (Diatomea), uncultured stramenopile 550312 (Diatomea), uncultured marine 550755 (Diatomea), uncultured marine 550828 (Diatomea), Nitzschia longissima (Diatomea), Craticula pseudocitrus (Diatomea), uncultured eukaryote 52878 (Diatomea), uncultured eukaryote 141758 (Diatomea), Nitzschia sigma (Diatomea), Bacillariophyta sp. (Diatomea), Amphora sp. (Diatomea), Navicula reinhardtii (Diatomea), uncultured marine 549449 (Diatomea), uncultured marine 549546 (Diatomea), Stauroneis kriegeri (Diatomea), Seminavis sp. (Diatomea), Craticula molestiformis (Diatomea), Actinella sp. (Diatomea), Cocconeis stauroneiformis (Diatomea), uncultured marine 552877 (Diatomea), Tabularia fasciculata (Diatomea), uncultured marine 553037 (Diatomea), uncultured marine 553043 (Diatomea), Entomoneis sp. (Diatomea), uncultured eukaryote 354592 (Diatomea), uncultured marine 550875 (Diatomea), Undatella sp. (Diatomea), uncultured marine 551418 (Diatomea), Pseudo-nitzschia pungens (Diatomea), uncultured marine 552756 (Diatomea), Planothidium frequentissimum (Diatomea), uncultured eukaryote 552874 (Diatomea), uncultured marine 552878 (Diatomea), uncultured stramenopile 552918 (Diatomea), uncultured marine 552940 (Diatomea), uncultured Encyonema 552979 (Diatomea), uncultured marine 552986 (Diatomea), uncultured marine 553025 (Diatomea), uncultured marine 553048 (Diatomea), Catenulaceae sp. (Diatomea), uncultured marine 553896 (Diatomea), uncultured eukaryote 206378 (Dinoflagellata), uncultured eukaryote 434933 (Dinoflagellata), Dinophyta sp. (Dinoflagellata), Aduncodinium glandula (Dinoflagellata), Leiocephalium pseudosanguineum (Dinoflagellata), Alexandrium insuetum (Dinoflagellata), Adenoides eludens (Dinoflagellata), Proterythropsis sp. (Dinoflagellata), uncultured eukaryote 550825 (Dinoflagellata), Blastodinium pruvoti (Dinoflagellata), Symbiodinium sp. (Dinoflagellata), uncultured eukaryote 550870 (Dinoflagellata), Pfiesteria-like sp. (Dinoflagellata), uncultured eukaryote 552836 (Dinoflagellata), uncultured eukaryote 552887 (Dinoflagellata), Ostreopsis cf. (Dinoflagellata), uncultured eukaryote 61173 (Dinoflagellata), uncultured eukaryote 203436 (Dinoflagellata), uncultured eukaryote 550121 (Dinoflagellata), uncultured marine 550798 (Dinoflagellata), uncultured eukaryote 551406 (Dinoflagellata), uncultured eukaryote 552869 (Dinoflagellata), Azadinium cuneatum (Dinoflagellata), uncultured eukaryote 553023 (Dinoflagellata), uncultured eukaryote 553908 (Dinoflagellata), uncultured eukaryote 553909 (Dinoflagellata), Notosolenus urceolatus (Euglenozoa), uncultured eukaryote 295877 (Euglenozoa), Neobodo designis (Euglenozoa), uncultured Sphenomonadales 548876 (Euglenozoa), Neobodo saliens (Euglenozoa), uncultured Sphenomonadales 532216 (Euglenozoa), uncultured kinetoplastid 548813 (Euglenozoa), Diplonema sp. (Euglenozoa), Diplonema ambulator (Euglenozoa), Bodonidae sp. (Euglenozoa), uncultured eukaryote 203439 (Euglenozoa), Lolium perenne (Euglenozoa), Rhynchopus sp. (Euglenozoa), Hemistasiidae sp. (Euglenozoa), uncultured Sphenomonadales 552824 (Euglenozoa), Diplonemida sp. (Euglenozoa), Paraphysomonas imperforata (Eukaryota), Symbiochloris sp. (Eukaryota), uncultured marine 1786 (Eukaryota), Dinophyceae sp. (Eukaryota), uncultured stramenopile 268057 (Eukaryota), uncultured eukaryote 549396 (Eukaryota), Pirum gemmata (Eukaryota), uncultured eukaryote 548965 (Eukaryota), Ulvophyceae sp. (Eukaryota), Ulvella viridis (Eukaryota), Paramoeba aestuarina (Eukaryota), Flabellulidae sp. (Eukaryota), uncultured stramenopile 549443 (Eukaryota), Trebouxia sp. (Eukaryota), Ciliophrys infusionum (Eukaryota), Paramoeba atlantica (Eukaryota), uncultured eukaryote 550086 (Eukaryota), uncultured Paraphysomonas 550087 (Eukaryota), uncultured eukaryote 60639 (Eukaryota), uncultured stramenopile 550791 (Eukaryota), uncultured marine 550819 (Eukaryota), Cladophora socialis (Eukaryota), Lessonia variegata (Eukaryota), uncultured eukaryote 532182 (Eukaryota), Acanthamoeba sp. (Eukaryota), Chattonella subsalsa (Eukaryota), Coccomyxa onubensis (Eukaryota), Caulerpa macrodisca (Eukaryota), uncultured stramenopile 550088 (Eukaryota), Paramoeba eilhardi (Eukaryota), Ruthnielsenia tenuis (Eukaryota), Pyramimonas olivacea (Eukaryota), Ulvella repens (Eukaryota), uncultured eukaryote 552843 (Eukaryota), uncultured eukaryote 552884 (Eukaryota), Ulvella ramosa (Eukaryota), Phaeophila dendroides (Eukaryota), uncultured Chlorophyta 706 (Eukaryota), Hazenia basiliensis (Eukaryota), Desmarestia viridis (Eukaryota), Scytosiphon lomentaria (Eukaryota), Creolimax fragrantissima (Eukaryota), uncultured eukaryote 497070 (Eukaryota), uncultured eukaryote 507295 (Eukaryota), Prasinoderma coloniale (Eukaryota), Pycnococcus sp. (Eukaryota), Lychaete ohkuboana (Eukaryota), uncultured eukaryote 550753 (Eukaryota), uncultured stramenopile 550832 (Eukaryota), eukaryotic picoplankton (Eukaryota), uncultured stramenopile 551397 (Eukaryota), Tetraselmis marina (Eukaryota), uncultured eukaryote 552879 (Eukaryota), Ulvella endozoica (Eukaryota), uncultured eukaryote 552937 (Eukaryota), uncultured stramenopile 552983 (Eukaryota), Nannochloris sp. (Eukaryota), uncultured eukaryote 553872 (Eukaryota), uncultured eukaryote 553874 (Eukaryota), uncultured marine 553884 (Eukaryota), Chrysophyceae sp. (Eukaryota), uncultured eukaryote 553891 (Eukaryota), Rhinomonas pauca (Eukaryota), Giraudyopsis stellifera (Eukaryota), Peyssonnelia novae-hollandiae (Florideophycidae), uncultured Corallinales 32421 (Florideophycidae), Melobesioideae sp. (Florideophycidae), Rhodachlya hawaiiana (Florideophycidae), Audouinella dasyae (Florideophycidae), uncultured Corallinales 326013 (Florideophycidae), Polyopes tenuis (Florideophycidae), uncultured eukaryote 548898 (Gastrotricha), Chaetonotus neptuni (Gastrotricha), Chaetonotus mariae (Gastrotricha), uncultured marine 2482 (Labyrinthulomycetes), Aplanochytrium kerguelense (Labyrinthulomycetes), Aplanochytrium stocchinoi (Labyrinthulomycetes), uncultured eukaryote 548686 (Labyrinthulomycetes), uncultured marine 1339 (Labyrinthulomycetes), Ulkenia profunda (Labyrinthulomycetes), uncultured eukaryote 4861 (Labyrinthulomycetes), uncultured eukaryote 72 (Labyrinthulomycetes), uncultured eukaryote 269 (Labyrinthulomycetes), uncultured eukaryote 371 (Labyrinthulomycetes), Labyrinthuloides minuta (Labyrinthulomycetes), uncultured marine 60756 (Labyrinthulomycetes), Thraustochytriidae sp. (Labyrinthulomycetes), uncultured eukaryote 2623 (Labyrinthulomycetes), Thraustochytrium multirudimentale (Labyrinthulomycetes), uncultured eukaryote 1117 (Labyrinthulomycetes), uncultured eukaryote 314880 (Labyrinthulomycetes), uncultured eukaryote 71955 (Labyrinthulomycetes), uncultured eukaryote 1233 (Labyrinthulomycetes), Aplanochytrium blankum (Labyrinthulomycetes), uncultured eukaryote 19816 (Labyrinthulomycetes), Oblongichytrium sp. (Labyrinthulomycetes), uncultured eukaryote 550847 (Labyrinthulomycetes), Stellarchytrium dubum (Labyrinthulomycetes), Thraustochytrium pachydermum (Labyrinthulomycetes), uncultured eukaryote 66634 (Labyrinthulomycetes), uncultured stramenopile 550786 (Labyrinthulomycetes), uncultured eukaryote 1294 (Labyrinthulomycetes), uncultured eukaryote 4942 (Labyrinthulomycetes), uncultured eukaryote 37874 (Labyrinthulomycetes), uncultured eukaryote 111727 (Labyrinthulomycetes), uncultured eukaryote 429522 (Labyrinthulomycetes), Aplanochytrium sp. (Labyrinthulomycetes), Thraustochytrium sp. (Labyrinthulomycetes), uncultured marine 552835 (Labyrinthulomycetes), uncultured eukaryote 552897 (Labyrinthulomycetes), Pseudophyllomitus vesiculosus (MAST-6), eukaryote marine (MAST-6), Xyzzors sp. (Nematozoa), Nematoda environmental (Nematozoa), Restionaceae environmental (Phragmoplastophyta), Mida salicifolia (Phragmoplastophyta), Setaria italica (Phragmoplastophyta), uncultured marine 268951 (Protalveolata), Chromera velia (Protalveolata), uncultured eukaryote 552838 (Protalveolata), uncultured eukaryote 553948 (Protalveolata), Styela gibbsii (Tunicata), Botryllus schlosseri (Tunicata), Boltenia villosa (Tunicata), Polycarpa mytiligera (Tunicata), Chromerida sp. (uncultured), uncultured eukaryote 550111 (uncultured), uncultured marine 249352 (uncultured)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Nitrosopumilus sp., Mycobacterium sp., Unclassified Bacteria 1800, Unclassified Bacteria 195182, Unclassified Piscirickettsiaceae 1975, Microbulbifer sp., Photobacterium angustum, Unclassified Bacteria 26049, Unclassified Pirellulaceae 14949, Unclassified Bacteria 791, Unclassified Bacteria 10020, Unclassified Bacteria 2094, Unclassified Bacteria 9129, Unclassified Bacteria 126911, Unclassified Bacteria 362840, Unclassified Bacteria 81476, Unclassified Piscirickettsiaceae 270653, Unclassified Bacteria 9721, Desulfococcus sp., Unclassified Bacteria 14517, Unclassified Clostridiaceae 1377, Unclassified Bacteria 346159, Unclassified Cenarchaeaceae 31722, Unclassified Bacteria 189199, Unclassified Hyphomicrobiaceae 253025, Unclassified Coxiellaceae 359934, Unclassified Peptostreptococcaceae 41166, Unclassified Bacteria 99527, Epulopiscium sp., Unclassified Hyphomicrobiaceae 1489, Unclassified Lachnospiraceae 12815, Unclassified Bacteria 68430, Nocardia sp., Unclassified koll13 40437, Clostridium sp., Unclassified Bacteria 55116, Unclassified Hyphomicrobiaceae 9813, Bacillus sp., Unclassified Lachnospiraceae 220739, Xenococcus sp., Tepidibacter sp., Unclassified Xenococcaceae 220470, Vibrio sp., Unclassified Legionellaceae 93683, Unclassified Bacteria 99471, Unclassified Lachnospiraceae 67609, Unclassified Bacteria 17915, Unclassified Bacteria 195054, Unclassified Pirellulaceae 362988, Unclassified Bacteria 362989, Unclassified Hyphomicrobiaceae 273, Unclassified Bacteria 62060, Synechococcus sp., Unclassified Bacteria 189176, Unclassified Pirellulaceae 363010, Unclassified Pirellulaceae 25806, Unclassified Nitrospiraceae 55498, Unclassified Pirellulaceae 81282, Unclassified [Amoebophilaceae] 93818, Unclassified Bacteria 235842, Unclassified Bacteria 87892, Unclassified Legionellaceae 363028, Amphritea sp., Unclassified Cohaesibacteraceae 26164, Unclassified Bacteria 81096, Unclassified Bacteria 363044, Unclassified Peptostreptococcaceae 253101, Unclassified Hyphomicrobiaceae 286, Unclassified Pirellulaceae 11597, Thalassomonas sp., Unclassified Bacteria 363081, Alteromonas sp., Unclassified Bacteria 249, Unclassified Rhodobacteraceae 1192, Unclassified Coxiellaceae 9755, Unclassified Clostridiaceae 64305, Unclassified Bacteria 253202, Unclassified Pirellulaceae 363093, Unclassified Hyphomicrobiaceae 27524, Unclassified Pirellulaceae 32974, Unclassified Flammeovirgaceae 363110, Unclassified Bacteria 363116, A17 sp., Unclassified Flammeovirgaceae 88338, Unclassified Bacteria 36764, Unclassified Bacteria 248383, Unclassified Bacteria 363157, Unclassified Criblamydiaceae 363163, Unclassified Bacteria 10830, Unclassified Peptostreptococcaceae 290953, Unclassified Clostridiaceae 292655, Unclassified Pirellulaceae 363184, Unclassified Hyphomicrobiaceae 363217, Verrucomicrobium sp., Unclassified Bacteria 132073, Unclassified Flavobacteriaceae 248663, Unclassified Pirellulaceae 363247, Unclassified Bacillaceae 4656, Unclassified Bacteria 126931, Unclassified Coxiellaceae 172750, Unclassified Xenococcaceae 346474, Phaeobacter sp., Ucs1325 sp., Unclassified Bacteria 363298, Unclassified Bacteria 4294, Unclassified Desulfobacteraceae 27376, Unclassified Flavobacteriaceae 33271, Cenarchaeum symbiosum, Unclassified Bacteria 112750, Unclassified Xenococcaceae 132144, Clostridiisalibacter sp., Unclassified Saprospiraceae 363335, Unclassified Bacteria 2256, Clostridium perfringens, Unclassified Bacteria 81817, Unclassified Bacteria 109107, Unclassified Flavobacteriaceae 363383, Unclassified Bacteria 363385, Unclassified Bacteria 363398, Unclassified NB1-i 363399, Unclassified Bacteria 542, Unclassified Nitrosomonadaceae 2057, Cobetia sp., Unclassified Rhodobacteraceae 11201, Unclassified Pirellulaceae 58353, Unclassified Bacteria 90672, Unclassified Clostridiaceae 191515, Unclassified Bacteria 245978, Rhodobacter sp., Paenibacillus sp., Unclassified JdFBGBact 4770, Unclassified Hyphomicrobiaceae 10456, Unclassified Bacteria 207798, Unclassified Pirellulaceae 363531, Inquilinus sp., Unclassified Legionellaceae 363550, nsmpVI18 sp., Unclassified Bacteria 366, Unclassified wb1_P06 102604, Unclassified Rhodospirillaceae 253488, Unclassified Bacteria 363631, Unclassified Rhodospirillaceae 363632, Unclassified Lachnospiraceae 363653, Unclassified Oceanospirillaceae 1145, Unclassified Phycisphaeraceae 25388, Unclassified Ectothiorhodospiraceae 140623, Unclassified Saprospiraceae 195212, Unclassified Bacteria 220341, Unclassified Bacteria 222335, Unclassified Microbacteriaceae 238763, Unclassified Pirellulaceae 363744, Unclassified Verrucomicrobiaceae 363747, Unclassified Sinobacteraceae 858, Unclassified Bacteria 11063, Unclassified Nitrospiraceae 25423, Unclassified Pirellulaceae 27973, Unclassified Bacteria 113798, Unclassified Bacteria 220365, Unclassified Pirellulaceae 248125, Unclassified JTB38 363914, Unclassified Pirellulaceae 363943, Unclassified Bacteria 363945, Unclassified Lachnospiraceae 363947, Propionigenium sp., Unclassified Piscirickettsiaceae 10337, Unclassified Pirellulaceae 12597, Unclassified Piscirickettsiaceae 26077, Planctomyces sp., Unclassified Pirellulaceae 235686, Unclassified Rhodospirillaceae 265618, Unclassified Xenococcaceae 346235, Unclassified Bacteria 364090, Unclassified Piscirickettsiaceae 364092, Unclassified Ectothiorhodospiraceae 364097, Cyanobacterium sp., Unclassified Chromatiaceae 364141, Unclassified Legionellaceae 117161, Unclassified Pirellulaceae 124686, Unclassified Rhodothermaceae 160931, Unclassified Piscirickettsiaceae 189758, Unclassified Pirellulaceae 364356, Unclassified Criblamydiaceae 364413, Unclassified Clostridiaceae 364417, Marinicella sp., Candidatus sp., Unclassified mitochondria 4445, Yersinia sp., Unclassified Bacteria 36352, Unclassified Nitrosomonadaceae 104582, Hyphomicrobium sp., Unclassified Coxiellaceae 241565, Unclassified Lachnospiraceae 261034, Unclassified Pirellulaceae 364692, Unclassified Pirellulaceae 364693, Unclassified Flammeovirgaceae 364702, Unclassified Flammeovirgaceae 364703, Unclassified Bacteria 54750, Unclassified Bacteria 131732, LCP-26 sp., Unclassified Bacteria 223904, Unclassified Bacteria 358800, Unclassified Nitrospiraceae 365137, Unclassified Rhodospirillaceae 365263, Bdellovibrio sp., Unclassified Bacteria 365270, Paracoccus sp., Unclassified Criblamydiaceae 365276, Unclassified Bacteria 96705, Unclassified Bacteria 230702, Unclassified Pirellulaceae 256348, Unclassified SJA-101 365819, Unclassified Pirellulaceae 365820, Unclassified Pirellulaceae 365825, Unclassified Bacteria 365983, Unclassified Desulfobulbaceae 365992, Acinetobacter sp., Unclassified Rhodocyclaceae 183995, Unclassified Flammeovirgaceae 253123, Unclassified Pirellulaceae 366870, Unclassified Piscirickettsiaceae 366884, Unclassified Piscirickettsiaceae 366885, Unclassified JTB38 366892, Unclassified Pirellulaceae 367129, Unclassified Bacteria 367142, Unclassified Coxiellaceae 367145, Unclassified Coxiellaceae 367147, Unclassified Coxiellaceae 367148, Unclassified Pirellulaceae 367150, Unclassified Criblamydiaceae 367156, Unclassified Syntrophobacteraceae 367157, Francisella sp., Unclassified Bacteria 367164, Corynebacterium sp., Unclassified Bacteria 11828, Unclassified Bacteroidaceae 62462, Unclassified Bacteria 91813, Unclassified Bacteria 195771, Unclassified Bacteria 221988, Unclassified Bacteria 280070, Unclassified Bacteria 368701, Unclassified Pirellulaceae 368703, Unclassified Pirellulaceae 368704, Unclassified Pirellulaceae 368710, Unclassified Pirellulaceae 368719, Unclassified Rhodospirillaceae 368725, Unclassified Piscirickettsiaceae 368728, Unclassified Piscirickettsiaceae 368729, Unclassified Piscirickettsiaceae 368732, Unclassified Piscirickettsiaceae 368734, Unclassified Piscirickettsiaceae 368745, Unclassified Legionellaceae 369206, Unclassified Desulfobacteraceae 369211, Unclassified Clostridiaceae 369214, Unclassified Lachnospiraceae 369215, Unclassified Peptostreptococcaceae 369218, Unclassified Caldilineaceae 369220, Unclassified Bacteria 369222, Unclassified Rhodobacteraceae 61807, Unclassified Syntrophobacteraceae 117208, Unclassified Bacteria 143322, Unclassified Hyphomicrobiaceae 165088, Unclassified Bacteria 209218, Unclassified Pirellulaceae 243237, Unclassified Hyphomicrobiaceae 254336, Unclassified Bacteria 315026, Unclassified Hyphomicrobiaceae 367381, Unclassified Pirellulaceae 372255, Unclassified wb1_P06 372266, Unclassified JdFBGBact 372267, Unclassified koll13 372268, Unclassified Pirellulaceae 372270, Unclassified Pirellulaceae 372271, Unclassified Pirellulaceae 372272, Unclassified Pirellulaceae 372274, Unclassified Bacteria 372277, Unclassified Bacteria 372278, Unclassified Piscirickettsiaceae 372280, Unclassified Pirellulaceae 372287, Unclassified Flavobacteriaceae 372293, Unclassified Flavobacteriaceae 372294, Unclassified Bacteria 372295, Unclassified Bacteria 372300, Unclassified koll13 372306, Unclassified Bacteria 372308, Unclassified Rhodospirillaceae 372309, Unclassified koll13 372310, Unclassified Piscirickettsiaceae 372322, Unclassified Piscirickettsiaceae 372323, Unclassified Piscirickettsiaceae 372324, Unclassified Bacteria 372326, Unclassified Flavobacteriaceae 372327, Unclassified Flammeovirgaceae 372328, Unclassified JTB38 372332, Unclassified Piscirickettsiaceae 372335, Unclassified Piscirickettsiaceae 372336, Unclassified koll13 372342, Unclassified Ectothiorhodospiraceae 372345, Unclassified Pirellulaceae 373070, Unclassified Pirellulaceae 373072, Unclassified Pirellulaceae 373077, Unclassified Pirellulaceae 373079, Unclassified Bacteria 373082, Unclassified Bacteria 373084, Unclassified Coxiellaceae 373090, Unclassified Legionellaceae 373092, Unclassified Coxiellaceae 373093, Unclassified Pirellulaceae 373096, Unclassified Hyphomicrobiaceae 373097, Unclassified Bacteria 373100, Unclassified Bacteria 373104, Unclassified Bacteria 373105, Unclassified Hyphomicrobiaceae 373107, Unclassified Hyphomicrobiaceae 373108, Unclassified Bacteria 373109, Unclassified Criblamydiaceae 373112, Unclassified Ectothiorhodospiraceae 373119, Unclassified Bacteria 373124, Microbulbifer elongatus, Unclassified Bacteria 373126, Unclassified Desulfobacteraceae 373128, Unclassified Microbacteriaceae 373132, Unclassified Bacillaceae 373134, Unclassified Bacillaceae 373135, Unclassified Clostridiaceae 373137, Unclassified Peptostreptococcaceae 373140, Unclassified Bacteria 373142, Unclassified Hyphomicrobiaceae 373149


DNA analysis conducted by AquaBiomics LLC.

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Certificate of Analysis LRS G11.2

Certificate of Analysis: Live Reef Sand, Batch LRS G11.2

lrs.g11.2_Certificate_of_Analysis

    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in a batch of Live Reef Sand. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrs.g11.2
Batch Name g12-15-25
Sample Date 1/16/26 10:00 AM

Microbial Diversity

This sample contained DNA from 473 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families with 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Nitrosomonadaceae
Type Percent of Community Genus Species
58445 0.35 Unknown Unknown
Cenarchaeaceae
Type Percent of Community Genus Species
73 0.92 Nitrosopumilus Unknown
29969 0.63 Unknown Unknown
2996 0.19 Nitrosopumilus Unknown
248127 0.18 Unknown Unknown
74696 0.11 Cenarchaeum symbiosum

Nitrite-Oxidizing Bacteria

Nitrospiraceae
Type Percent of Community Genus Species
9977 0.01 Unknown Unknown
The nitrifying community in this sample included 7 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marscesens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 900 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families with 3 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Chitinopoma serrula (Annelida), Novafabricia sp. (Annelida), Paranerilla limicola (Annelida), Nenesidea oligodentata (Arthropoda), Coquimba ishizakii (Arthropoda), Agauopsis legionium (Arthropoda), Robustaurila salebrosa (Arthropoda), Sellea sp. (Arthropoda), Saccharum hybrid (Arthropoda), Artemia salina (Arthropoda), uncultured eukaryote 542594 (Arthropoda), Pseudanaphothrips achaetus (Arthropoda), Aspergillus cristatus (Ascomycota), Stagonosporopsis cucurbitacearum (Ascomycota), Humulus lupulus (Ascomycota), Graminopassalora graminis (Ascomycota), Aspergillus amstelodami (Ascomycota), Wallemia sebi (Basidiomycota), Postia placenta (Basidiomycota), Psathyrella candolleana (Basidiomycota), Cryptococcus sp. (Basidiomycota), Filobasidium floriforme (Basidiomycota), Goffeauzyma gastrica (Basidiomycota), metagenome (Centrohelida), Paradinium poucheti (Cercozoa), uncultured marine 15485 (Cercozoa), Gromia oviformis (Cercozoa), uncultured eukaryote 2529 (Cercozoa), uncultured Cercozoa 54890 (Cercozoa), Protaspis grandis (Cercozoa), Reckertia gemma (Cercozoa), Protaspis sp. (Cercozoa), uncultured marine 60804 (Cercozoa), Ventrifissura sp. (Cercozoa), uncultured eukaryote 541785 (Cercozoa), marine metagenome (Cercozoa), uncultured marine 541812 (Cercozoa), Vampyrellida sp. (Cercozoa), Ventrifissura artocarpoidea (Cercozoa), uncultured eukaryote 542140 (Cercozoa), uncultured marine 425196 (Cercozoa), uncultured Cercozoa 542384 (Cercozoa), metagenome (Cercozoa), Metanophrys sinensis (Ciliophora), Moneuplotes minuta (Ciliophora), Heterohartmannula fangi (Ciliophora), Paracineta limbata (Ciliophora), Loxophyllum shini (Ciliophora), Euplotes euryhalinus (Ciliophora), Stichotricha aculeata (Ciliophora), Diophrys oligothrix (Ciliophora), Holosticha diademata (Ciliophora), Diophrys parappendiculata (Ciliophora), Amphileptus spiculatus (Ciliophora), Cothurnia salina (Ciliophora), Euplotes rariseta (Ciliophora), Holosticha heterofoissneri (Ciliophora), uncultured eukaryote 542028 (Ciliophora), uncultured ciliate 2052 (Ciliophora), Glauconema trihymene (Ciliophora), Vorticella oceanica (Ciliophora), Amphileptus litonotiformis (Ciliophora), Pseudovorticella paracratera (Ciliophora), uncultured alveolate 60809 (Ciliophora), Stichotrichia sp. (Ciliophora), Sathrophilus holtae (Ciliophora), Platynematum salinarum (Ciliophora), Omegastrombidium elegans (Ciliophora), Uronychia setigera (Ciliophora), Euplotes sp. (Ciliophora), Aristerostoma sp. (Ciliophora), Dysteria pectinata (Ciliophora), Protogastrostyla pulchra (Ciliophora), uncultured ciliate 245931 (Ciliophora), Varistrombidium kielum (Ciliophora), Thigmokeronopsis sp. (Ciliophora), Phyllangia mouchezii (Cnidaria), Mycetophyllia daniana (Cnidaria), Pachyseris speciosa (Cnidaria), Astrangia poculata (Cnidaria), Xenia sp. (Cnidaria), uncultured eukaryote 6222 (Diatomea), Halamphora subtropica (Diatomea), uncultured marine 541685 (Diatomea), Pleurosigma sp. (Diatomea), uncultured marine 472638 (Diatomea), Licmophora sp. (Diatomea), Psammodictyon constrictum (Diatomea), Haslea spicula (Diatomea), uncultured marine 541667 (Diatomea), Entomoneis ornata (Diatomea), uncultured marine 541909 (Diatomea), uncultured marine 166879 (Diatomea), Licmophora juergensii (Diatomea), Convoluta convoluta (Diatomea), Haslea ostrearia (Diatomea), Craticula pseudocitrus (Diatomea), Navicula arenaria (Diatomea), uncultured marine 543231 (Diatomea), Sellaphora pupula (Diatomea), Halamphora costata (Diatomea), Eolimna minima (Diatomea), uncultured eukaryote 543324 (Diatomea), Sellaphora sp. (Diatomea), uncultured marine 152470 (Diatomea), Cocconeis placentula (Diatomea), Pfiesteria-like sp. (Dinoflagellata), Symbiodinium sp. (Dinoflagellata), Symbiodinium microadriaticum (Dinoflagellata), Ostreopsis cf. (Dinoflagellata), uncultured eukaryote 50575 (Dinoflagellata), uncultured eukaryote 407479 (Dinoflagellata), uncultured eukaryote 543241 (Dinoflagellata), Amphidinium sp. (Dinoflagellata), Prorocentrum arenarium (Dinoflagellata), uncultured eukaryote 203436 (Dinoflagellata), uncultured eukaryote 295341 (Dinoflagellata), Symbiodinium minutum (Dinoflagellata), uncultured eukaryote 542387 (Dinoflagellata), Dinophyta sp. (Dinoflagellata), Diplonema sp. (Euglenozoa), uncultured eukaryote 17870 (Euglenozoa), Diplonemida sp. (Euglenozoa), uncultured kinetoplastid 13113 (Euglenozoa), Hemistasiidae sp. (Euglenozoa), Notosolenus urceolatus (Euglenozoa), uncultured eukaryote 541798 (Euglenozoa), Neobodo designis (Euglenozoa), Bodonidae sp. (Euglenozoa), uncultured eukaryote 542293 (Euglenozoa), Rhynchomonas nasuta (Euglenozoa), Klosteria bodomorphis (Euglenozoa), Kinetoplastida sp. (Euglenozoa), uncultured eukaryote 291943 (Euglenozoa), Rhynchopus sp. (Euglenozoa), uncultured eukaryote 32619 (Eukaryota), Paraphysomonas imperforata (Eukaryota), Phaeophila dendroides (Eukaryota), uncultured eukaryote 541736 (Eukaryota), Paramoeba branchiphila (Eukaryota), eukaryote clone (Eukaryota), uncultured eukaryote 1494 (Eukaryota), Ulvophyceae sp. (Eukaryota), Ciliophrys infusionum (Eukaryota), Vannella sp. (Eukaryota), uncultured eukaryote 541928 (Eukaryota), Rhodomonas abbreviata (Eukaryota), uncultured eukaryote 541866 (Eukaryota), Hazenia basiliensis (Eukaryota), Ulvella viridis (Eukaryota), Amphibiocystidium ranae (Eukaryota), Picochlorum eukaryotum (Eukaryota), uncultured stramenopile 542091 (Eukaryota), uncultured eukaryote 543226 (Eukaryota), Pseudulvella consociata (Eukaryota), Rhinomonas pauca (Eukaryota), uncultured marine 543286 (Eukaryota), Scytosiphon lomentaria (Eukaryota), Anurofeca richardsi (Eukaryota), uncultured eukaryote 541893 (Eukaryota), uncultured stramenopile 541927 (Eukaryota), Carinoma tremaphoros (Eukaryota), uncultured eukaryote 542380 (Eukaryota), uncultured eukaryote 542591 (Eukaryota), uncultured eukaryote 542610 (Eukaryota), Rhodomonas marina (Eukaryota), Rhodomonas sp. (Eukaryota), Anurofeca sp. (Eukaryota), metagenome (Eukaryota), uncultured eukaryote 542906 (Eukaryota), Tetraselmis sp. (Eukaryota), uncultured stramenopile 542919 (Eukaryota), Rhodopeltis borealis (Florideophycidae), uncultured Corallinales 152450 (Florideophycidae), Lithophyllum cf. (Florideophycidae), uncultured Corallinales 32421 (Florideophycidae), uncultured Corallinales 21317 (Florideophycidae), uncultured Corallinales 1433 (Florideophycidae), Peyssonnelia novae-hollandiae (Florideophycidae), Dichotomaria marginata (Florideophycidae), Naccaria wiggii (Florideophycidae), Polyopes tenuis (Florideophycidae), Melobesioideae sp. (Florideophycidae), Peyssonnelia capensis (Florideophycidae), Cordylecladia erecta (Florideophycidae), uncultured Corallinales 324879 (Florideophycidae), Renouxia sp. (Florideophycidae), Hapalidiaceae sp. (Florideophycidae), Corallinales sp. (Florideophycidae), Bonnemaisonia asparagoides (Florideophycidae), uncultured Corallinales 32614 (Florideophycidae), Gastroclonium pacificum (Florideophycidae), uncultured Corallinales 326013 (Florideophycidae), uncultured Corallinales 363979 (Florideophycidae), uncultured Corallinales 364950 (Florideophycidae), uncultured Corallinales 541886 (Florideophycidae), Weeksia coccinea (Florideophycidae), uncultured Corallinales 542500 (Florideophycidae), Audouinella dasyae (Florideophycidae), Spyridia dasyoides (Florideophycidae), Polyides rotundus (Florideophycidae), Schmitzia sp. (Florideophycidae), uncultured Corallinales 543306 (Florideophycidae), uncultured eukaryote 543307 (Florideophycidae), uncultured eukaryote 543309 (Florideophycidae), uncultured Corallinales 543310 (Florideophycidae), Prionitis lyallii (Florideophycidae), uncultured Corallinales 543312 (Florideophycidae), uncultured Corallinales 543315 (Florideophycidae), uncultured Corallinales 543316 (Florideophycidae), Hymenocladiopsis prolifera (Florideophycidae), Lithophyllum pustulatum (Florideophycidae), uncultured Corallinales 542633 (Florideophycidae), Chaetonotus neptuni (Gastrotricha), Chaetonotus sp. (Gastrotricha), Oblongichytrium sp. (Labyrinthulomycetes), uncultured eukaryote 72 (Labyrinthulomycetes), Schizochytrium minutum (Labyrinthulomycetes), Thraustochytrium multirudimentale (Labyrinthulomycetes), uncultured eukaryote 4861 (Labyrinthulomycetes), Thraustochytrium pachydermum (Labyrinthulomycetes), Labyrinthuloides minuta (Labyrinthulomycetes), Stellarchytrium dubum (Labyrinthulomycetes), uncultured marine 1339 (Labyrinthulomycetes), Thraustochytriidae sp. (Labyrinthulomycetes), uncultured stramenopile 21358 (Labyrinthulomycetes), uncultured eukaryote 47361 (Labyrinthulomycetes), uncultured eukaryote 67219 (Labyrinthulomycetes), uncultured eukaryote 1117 (Labyrinthulomycetes), Thraustochytrium sp. (Labyrinthulomycetes), uncultured eukaryote 402669 (Labyrinthulomycetes), uncultured eukaryote 541985 (Labyrinthulomycetes), uncultured marine 543212 (Labyrinthulomycetes), Aplanochytrium sp. (Labyrinthulomycetes), uncultured eukaryote 4141 (Labyrinthulomycetes), uncultured eukaryote 5115 (Labyrinthulomycetes), uncultured eukaryote 408039 (Labyrinthulomycetes), Ulkenia profunda (Labyrinthulomycetes), Haliphthoros sp. (Peronosporomycetes), Olpidiopsis sp. (Peronosporomycetes), Halodaphnea panulirata (Peronosporomycetes), uncultured stramenopile 542376 (Peronosporomycetes), uncultured stramenopile 542619 (Peronosporomycetes), Leuconia nivea (Porifera), Leucetta sp. (Porifera), Grantiopsis heroni (Porifera), Spirastrella sp. (Porifera), Clathrina luteoculcitella (Porifera), Aphroceras sp. (Porifera), Eilhardia schulzei (Porifera), Clathrina sp. (Porifera), Ernstia adusta (Porifera), Leucaltis clathria (Porifera), Murrayona phanolepis (Porifera), uncultured eukaryote 135208 (Protalveolata), uncultured eukaryote 541706 (Protalveolata), uncultured eukaryote 32469 (Protalveolata), uncultured marine 268951 (Protalveolata), uncultured eukaryote 66827 (Protalveolata), uncultured eukaryote 543277 (Protalveolata), uncultured eukaryote 52921 (Protalveolata), uncultured eukaryote 542285 (Protalveolata), uncultured eukaryote 542615 (Protalveolata), uncultured eukaryote 1004 (uncultured), uncultured eukaryote 1059 (uncultured), uncultured eukaryote 542092 (uncultured), uncultured eukaryote 542637 (uncultured)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Unclassified Desulfovibrionaceae 96, Photobacterium angustum, Unclassified Coxiellaceae 2257, Unclassified Hyphomicrobiaceae 1489, Curtobacterium sp., Clostridium sp., Unclassified Marinilabiaceae 358310, Unclassified Bacteria 171772, Microbulbifer sp., Nitrosopumilus sp., Unclassified Hyphomicrobiaceae 273, Staphylococcus aureus, Unclassified Oleiphilaceae 67653, Unclassified Bacteria 195182, Unclassified Bacteria 9721, Arcobacter sp., Unclassified Bacteria 11774, Unclassified Bacteria 67693, Unclassified Cenarchaeaceae 29969, Unclassified Bacteria 58502, Crocinitomix sp., Desulfofrigus sp., Rhodovulum sp., Unclassified Alteromonadaceae 25663, Unclassified Kordiimonadaceae 336106, Unclassified [Amoebophilaceae] 1322, Unclassified Micrococcaceae 154917, Pseudoalteromonas sp., Unclassified Alteromonadaceae 16245, Unclassified Lentisphaeraceae 15113, Unclassified Phyllobacteriaceae 9876, Unclassified Lentisphaeraceae 1218, Olleya sp., Hirschia baltica, Unclassified Bacteria 233516, Unclassified Rhodobacteraceae 41, Unclassified Nitrosomonadaceae 58445, Unclassified Bacteria 62060, Unclassified Vibrionaceae 166, Candidatus sp., Unclassified Bacteria 128, Unclassified Hyphomicrobiaceae 104, Unclassified Hyphomicrobiaceae 3790, Unclassified Vibrionaceae 58111, Unclassified Flavobacteriaceae 328, HTCC sp., Unclassified Legionellaceae 11183, Mycobacterium sp., BD2-13 sp., Unclassified Bacteria 30, Unclassified Bacteria 994, Pelagicoccus sp., Unclassified Colwelliaceae 164283, Unclassified Alteromonadaceae 358342, Unclassified Bacteria 319159, Unclassified Alteromonadaceae 10024, Unclassified Bacteria 4091, Bdellovibrio sp., Unclassified Pirellulaceae 109572, Amphritea sp., Unclassified Bacteria 106413, Unclassified Bacteria 358323, Unclassified Coxiellaceae 66758, Unclassified Bacteria 358354, Unclassified Colwelliaceae 102236, Unclassified Rhodospirillaceae 122953, Unclassified Bacteria 10172, Unclassified Coxiellaceae 358361, Unclassified Bacteria 358362, Desulfovibrio sp., Planctomyces sp., Unclassified Victivallaceae 358364, Tenacibaculum sp., Unclassified Phyllobacteriaceae 1520, Unclassified Oleiphilaceae 2222, Unclassified Colwelliaceae 50492, Oleibacter sp., Unclassified Cenarchaeaceae 248127, Unclassified Legionellaceae 309248, Unclassified Clostridiaceae 358372, Unclassified Pelagibacteraceae 1, Unclassified Bacteriovoracaceae 358374, Caldanaerocella sp., Unclassified Colwelliaceae 358382, Propionigenium sp., Francisella sp., Hyphomicrobium zavarzinii, Coraliomargarita sp., Desulfococcus sp., Clostridiisalibacter sp., Unclassified Methylophilaceae 392, Plesiocystis sp., Unclassified Bacteria 18392, Unclassified Saprospiraceae 46810, Kocuria sp., Hyphomicrobium sp., Halomonas sp., Unclassified Hyphomicrobiaceae 9813, Unclassified Bacteria 949, Unclassified Hyphomicrobiaceae 2139, Unclassified Bacteria 2152, Unclassified Rhodospirillaceae 56010, Fusibacter sp., Unclassified Pirellulaceae 977, Unclassified Oceanospirillaceae 24958, Unclassified Bacteria 81096, Unclassified Bacteria 340180, Unclassified Bacteria 4793, Unclassified Saprospiraceae 6824, Devosia sp., Unclassified Bacteria 213686, Unclassified Bacteria 36756, Cenarchaeum symbiosum, Unclassified Pirellulaceae 137577, Unclassified JTB36 186605, Unclassified Rhodospirillaceae 27702, Tepidibacter sp., Unclassified Oleiphilaceae 358415, Unclassified Flavobacteriaceae 358428, Unclassified Bacteria 345, Ucs1325 sp., Unclassified [Marinicellaceae] 31880, Unclassified Bacteria 235576, Spirochaeta sp., Unclassified Bacteria 2629, Unclassified Bacteria 6853, Thalassospira sp., Neptunomonas sp., Inquilinus sp., Unclassified Bacteria 190350, Unclassified [Amoebophilaceae] 358451, Cobetia sp., Unclassified Flavobacteriaceae 58290, Glaciecola sp., Unclassified Chitinophagaceae 1434, Unclassified Bacteria 2492, Polaribacter sp., Unclassified Bacteria 72622, Sulfurimonas sp., Unclassified Hyphomonadaceae 290, Methylobacterium sp., Unclassified Bacteria 4372, Unclassified Bacteria 68755, Unclassified Bacteria 84524, Unclassified Hyphomonadaceae 112803, Unclassified Pirellulaceae 358534, Unclassified Lachnospiraceae 358537, Unclassified Bacteria 1347, Finegoldia sp., Unclassified Caulobacteraceae 5440, Aquarickettsia rohweri, Unclassified Bacteria 27890, Unclassified NS11-12 76843, Unclassified Bacteria 358558, Unclassified Bacteria 358560, Unclassified Bacteria 358561, Unclassified Oceanospirillaceae 1096, Agarivorans sp., Unclassified Alteromonadaceae 358600, Achromobacter sp., Unclassified Bacteria 4991, Unclassified Bacteria 7594, Unclassified Bacteria 129144, Unclassified Bacteria 358629, Unclassified Alteromonadaceae 358630, Unclassified Oleiphilaceae 358632, Unclassified Alteromonadaceae 358633, Unclassified [Amoebophilaceae] 1274, Unclassified Oleiphilaceae 139262, Unclassified Desulfobacteraceae 251530, Balneola sp., Lactobacillus iners, Unclassified Bacteria 46553, Unclassified [Amoebophilaceae] 102524, Unclassified Phyllobacteriaceae 358715, Unclassified Bacteria 358716, Microbulbifer elongatus, Unclassified Flavobacteriaceae 358774, Unclassified Nitrospiraceae 9977, Unclassified Hyphomicrobiaceae 25362, Mycoplasma sp., Unclassified Lachnospiraceae 67609, Unclassified Hyphomicrobiaceae 106403, Unclassified Bacteria 155446, Unclassified Hyphomicrobiaceae 165088, Unclassified Alteromonadaceae 191057, Unclassified Rhodobacteraceae 220028, Unclassified Coxiellaceae 235007, Unclassified Colwelliaceae 358785, Unclassified Oleiphilaceae 358831, Unclassified Hyphomicrobiaceae 99435, Unclassified Bacteria 139823, Unclassified Oceanospirillaceae 181547, Unclassified Alteromonadaceae 209053, Unclassified Coxiellaceae 358916, Unclassified Coxiellaceae 358917, Unclassified Oleiphilaceae 358921, Unclassified Oleiphilaceae 358922, Unclassified Alteromonadaceae 358925


DNA analysis conducted by AquaBiomics LLC.

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Certificate of Analysis LRR G11.1

Certificate of Analysis: Live Reef Rubble, Batch LRR G11.1

lrr.g11.1_Certificate_of_Analysis

    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in and on a batch of Live Reef Rubble. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrr.g11.1
Batch Name g12-15-25
Sample Date 1/16/26 10:00 AM

Microbial Diversity

This sample contained DNA from 475 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Nitrosomonadaceae
Type Percent of Community Genus Species
58445 0.35 Unknown Unknown
Cenarchaeaceae
Type Percent of Community Genus Species
73 0.91 Nitrosopumilus Unknown
29969 0.62 Unknown Unknown
2996 0.19 Nitrosopumilus Unknown
248127 0.18 Unknown Unknown
74696 0.11 Cenarchaeum symbiosum

Nitrite-Oxidizing Bacteria

Nitrospiraceae
Type Percent of Community Genus Species
9977 0.01 Unknown Unknown
The nitrifying community in this sample included 7 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marcescens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 720 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Chitinopoma serrula (Annelida), Novafabricia sp. (Annelida), uncultured eukaryote 541720 (Apicomplexa), Lecudina phyllochaetopteri (Apicomplexa), Sellea sp. (Arthropoda), Saccharum hybrid (Arthropoda), Artemia salina (Arthropoda), uncultured eukaryote 542594 (Arthropoda), Pseudanaphothrips achaetus (Arthropoda), Aspergillus cristatus (Ascomycota), Stagonosporopsis cucurbitacearum (Ascomycota), Humulus lupulus (Ascomycota), Graminopassalora graminis (Ascomycota), Aspergillus amstelodami (Ascomycota), Wallemia sebi (Basidiomycota), Postia placenta (Basidiomycota), Psathyrella candolleana (Basidiomycota), Cryptococcus sp. (Basidiomycota), Filobasidium floriforme (Basidiomycota), Goffeauzyma gastrica (Basidiomycota), uncultured eukaryote 1396 (Bicosoecida), Licmophora sp. (Bicosoecida), metagenome (Centrohelida), Paradinium poucheti (Cercozoa), uncultured marine 15485 (Cercozoa), Gromia oviformis (Cercozoa), uncultured eukaryote 2529 (Cercozoa), Protaspis grandis (Cercozoa), Reckertia gemma (Cercozoa), uncultured Cercozoa 54890 (Cercozoa), Protaspis sp. (Cercozoa), uncultured marine 60804 (Cercozoa), Ventrifissura sp. (Cercozoa), marine metagenome (Cercozoa), uncultured eukaryote 541785 (Cercozoa), uncultured marine 541812 (Cercozoa), Vampyrellida sp. (Cercozoa), Ventrifissura artocarpoidea (Cercozoa), uncultured marine 425196 (Cercozoa), uncultured Cercozoa 542384 (Cercozoa), metagenome (Cercozoa), Metanophrys sinensis (Ciliophora), Moneuplotes minuta (Ciliophora), Heterohartmannula fangi (Ciliophora), Loxophyllum shini (Ciliophora), Paracineta limbata (Ciliophora), Euplotes euryhalinus (Ciliophora), Diophrys oligothrix (Ciliophora), Holosticha diademata (Ciliophora), Stichotricha aculeata (Ciliophora), Euplotes rariseta (Ciliophora), Holosticha heterofoissneri (Ciliophora), Glauconema trihymene (Ciliophora), Diophrys parappendiculata (Ciliophora), Pseudovorticella paracratera (Ciliophora), uncultured alveolate 60809 (Ciliophora), uncultured eukaryote 542028 (Ciliophora), Stichotrichia sp. (Ciliophora), Amphileptus spiculatus (Ciliophora), Euplotes sp. (Ciliophora), Vorticella oceanica (Ciliophora), Aristerostoma sp. (Ciliophora), Dysteria pectinata (Ciliophora), uncultured ciliate 2052 (Ciliophora), Amphileptus litonotiformis (Ciliophora), Protogastrostyla pulchra (Ciliophora), uncultured ciliate 245931 (Ciliophora), Varistrombidium kielum (Ciliophora), Thigmokeronopsis sp. (Ciliophora), Phyllangia mouchezii (Cnidaria), Astrangia poculata (Cnidaria), Xenia sp. (Cnidaria), Mycetophyllia aliciae (Cnidaria), uncultured eukaryote 6222 (Diatomea), Halamphora subtropica (Diatomea), uncultured marine 472638 (Diatomea), uncultured marine 541685 (Diatomea), Psammodictyon constrictum (Diatomea), Pleurosigma sp. (Diatomea), uncultured marine 541667 (Diatomea), Entomoneis ornata (Diatomea), uncultured marine 541909 (Diatomea), Licmophora juergensii (Diatomea), uncultured marine 166879 (Diatomea), Licmophora sp. (Diatomea), Convoluta convoluta (Diatomea), Craticula pseudocitrus (Diatomea), Sellaphora sp. (Diatomea), Haslea spicula (Diatomea), uncultured marine 152470 (Diatomea), Cocconeis placentula (Diatomea), Phaeodactylum tricornutum (Diatomea), Pfiesteria-like sp. (Dinoflagellata), Symbiodinium sp. (Dinoflagellata), Symbiodinium microadriaticum (Dinoflagellata), Ostreopsis cf. (Dinoflagellata), uncultured eukaryote 50575 (Dinoflagellata), uncultured eukaryote 407479 (Dinoflagellata), Amphidinium sp. (Dinoflagellata), Prorocentrum arenarium (Dinoflagellata), uncultured eukaryote 203436 (Dinoflagellata), uncultured eukaryote 295341 (Dinoflagellata), Symbiodinium minutum (Dinoflagellata), uncultured eukaryote 542387 (Dinoflagellata), Dinophyta sp. (Dinoflagellata), Diplonema sp. (Euglenozoa), uncultured eukaryote 17870 (Euglenozoa), Diplonemida sp. (Euglenozoa), Hemistasiidae sp. (Euglenozoa), Notosolenus urceolatus (Euglenozoa), Neobodo designis (Euglenozoa), uncultured kinetoplastid 13113 (Euglenozoa), uncultured eukaryote 541798 (Euglenozoa), uncultured eukaryote 542293 (Euglenozoa), Klosteria bodomorphis (Euglenozoa), Kinetoplastida sp. (Euglenozoa), uncultured eukaryote 291943 (Euglenozoa), Rhynchopus sp. (Euglenozoa), uncultured eukaryote 32619 (Eukaryota), Paraphysomonas imperforata (Eukaryota), uncultured eukaryote 541736 (Eukaryota), Paramoeba branchiphila (Eukaryota), eukaryote clone (Eukaryota), uncultured eukaryote 1494 (Eukaryota), Ulvophyceae sp. (Eukaryota), Ciliophrys infusionum (Eukaryota), Vannella sp. (Eukaryota), uncultured eukaryote 541928 (Eukaryota), Rhodomonas abbreviata (Eukaryota), uncultured eukaryote 541866 (Eukaryota), Amphibiocystidium ranae (Eukaryota), Picochlorum eukaryotum (Eukaryota), uncultured stramenopile 542091 (Eukaryota), Scytosiphon lomentaria (Eukaryota), Anurofeca richardsi (Eukaryota), uncultured eukaryote 380705 (Eukaryota), uncultured eukaryote 541893 (Eukaryota), uncultured stramenopile 541927 (Eukaryota), Carinoma tremaphoros (Eukaryota), uncultured eukaryote 542380 (Eukaryota), uncultured eukaryote 542442 (Eukaryota), uncultured eukaryote 542591 (Eukaryota), uncultured eukaryote 542610 (Eukaryota), Rhodomonas marina (Eukaryota), Rhinomonas pauca (Eukaryota), Rhodomonas sp. (Eukaryota), Anurofeca sp. (Eukaryota), metagenome (Eukaryota), uncultured eukaryote 542906 (Eukaryota), Tetraselmis sp. (Eukaryota), uncultured stramenopile 542919 (Eukaryota), uncultured eukaryote 542986 (Eukaryota), uncultured marine 542987 (Eukaryota), Peyssonnelia novae-hollandiae (Florideophycidae), uncultured Corallinales 32421 (Florideophycidae), uncultured Corallinales 21317 (Florideophycidae), uncultured Corallinales 152450 (Florideophycidae), Peyssonnelia capensis (Florideophycidae), uncultured Corallinales 363979 (Florideophycidae), uncultured eukaryote 541841 (Florideophycidae), Melobesioideae sp. (Florideophycidae), Peyssonnelia sp. (Florideophycidae), uncultured Corallinales 1433 (Florideophycidae), Rhodopeltis borealis (Florideophycidae), uncultured eukaryote 542438 (Florideophycidae), Lithophyllum pustulatum (Florideophycidae), uncultured Corallinales 32614 (Florideophycidae), Cordylecladia erecta (Florideophycidae), uncultured Corallinales 542175 (Florideophycidae), uncultured Corallinales 542633 (Florideophycidae), Oblongichytrium sp. (Labyrinthulomycetes), uncultured eukaryote 72 (Labyrinthulomycetes), Schizochytrium minutum (Labyrinthulomycetes), Thraustochytrium multirudimentale (Labyrinthulomycetes), Thraustochytrium pachydermum (Labyrinthulomycetes), Labyrinthuloides minuta (Labyrinthulomycetes), uncultured eukaryote 4861 (Labyrinthulomycetes), Stellarchytrium dubum (Labyrinthulomycetes), Thraustochytriidae sp. (Labyrinthulomycetes), uncultured stramenopile 21358 (Labyrinthulomycetes), uncultured eukaryote 47361 (Labyrinthulomycetes), uncultured eukaryote 67219 (Labyrinthulomycetes), uncultured eukaryote 1117 (Labyrinthulomycetes), Thraustochytrium sp. (Labyrinthulomycetes), uncultured marine 1339 (Labyrinthulomycetes), uncultured eukaryote 402669 (Labyrinthulomycetes), uncultured eukaryote 541985 (Labyrinthulomycetes), uncultured eukaryote 4141 (Labyrinthulomycetes), uncultured eukaryote 5115 (Labyrinthulomycetes), uncultured eukaryote 408039 (Labyrinthulomycetes), Ulkenia profunda (Labyrinthulomycetes), Haliphthoros sp. (Peronosporomycetes), Olpidiopsis sp. (Peronosporomycetes), Halodaphnea panulirata (Peronosporomycetes), uncultured stramenopile 542619 (Peronosporomycetes), Triticum aestivum (Phragmoplastophyta), Manilkara zapota (Phragmoplastophyta), Spirastrella sp. (Porifera), Leuconia nivea (Porifera), Leucetta sp. (Porifera), Grantiopsis heroni (Porifera), Demospongiae sp. (Porifera), Clathrina luteoculcitella (Porifera), Aphroceras sp. (Porifera), Eilhardia schulzei (Porifera), Spheciospongia vesparium (Porifera), Clathrina sp. (Porifera), Ernstia adusta (Porifera), Leucaltis clathria (Porifera), Murrayona phanolepis (Porifera), Soleneiscus stolonifer (Porifera), uncultured eukaryote 135208 (Protalveolata), uncultured eukaryote 32469 (Protalveolata), uncultured marine 268951 (Protalveolata), uncultured eukaryote 541706 (Protalveolata), uncultured eukaryote 66827 (Protalveolata), uncultured eukaryote 52921 (Protalveolata), uncultured eukaryote 542285 (Protalveolata), uncultured eukaryote 542615 (Protalveolata), uncultured eukaryote 1004 (uncultured), uncultured eukaryote 1059 (uncultured), uncultured eukaryote 542092 (uncultured), uncultured eukaryote 542637 (uncultured)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Unclassified Desulfovibrionaceae 96, Photobacterium angustum, Unclassified Coxiellaceae 2257, Unclassified Hyphomicrobiaceae 1489, Curtobacterium sp., Clostridium sp., Unclassified Marinilabiaceae 358310, Unclassified Bacteria 171772, Microbulbifer sp., Nitrosopumilus sp., Unclassified Hyphomicrobiaceae 273, Staphylococcus aureus, Unclassified Oleiphilaceae 67653, Unclassified Bacteria 195182, Unclassified Bacteria 9721, Arcobacter sp., Unclassified Bacteria 11774, Unclassified Bacteria 67693, Unclassified Cenarchaeaceae 29969, Unclassified Bacteria 58502, Crocinitomix sp., Desulfofrigus sp., Rhodovulum sp., Unclassified Alteromonadaceae 25663, Unclassified Kordiimonadaceae 336106, Unclassified [Amoebophilaceae] 1322, Unclassified Micrococcaceae 154917, Pseudoalteromonas sp., Unclassified Alteromonadaceae 16245, Unclassified Lentisphaeraceae 15113, Unclassified Phyllobacteriaceae 9876, Unclassified Lentisphaeraceae 1218, Olleya sp., Hirschia baltica, Unclassified Bacteria 233516, Unclassified Rhodobacteraceae 41, Unclassified Nitrosomonadaceae 58445, Unclassified Bacteria 62060, Unclassified Bacteria 10172, Unclassified Vibrionaceae 166, Candidatus sp., Unclassified Bacteria 128, Unclassified Hyphomicrobiaceae 104, Unclassified Hyphomicrobiaceae 3790, Unclassified Vibrionaceae 58111, Unclassified Flavobacteriaceae 328, HTCC sp., Unclassified Legionellaceae 11183, Mycobacterium sp., BD2-13 sp., Unclassified Bacteria 30, Photobacterium rosenbergii, Unclassified Bacteria 994, Pelagicoccus sp., Unclassified Colwelliaceae 164283, Unclassified Alteromonadaceae 358342, Unclassified Bacteria 319159, Unclassified Alteromonadaceae 10024, Unclassified Bacteria 4091, Bdellovibrio sp., Unclassified Pirellulaceae 109572, Amphritea sp., Unclassified Bacteria 106413, Unclassified Bacteria 358323, Unclassified Coxiellaceae 66758, Unclassified Bacteria 358354, Unclassified Colwelliaceae 102236, Unclassified Rhodospirillaceae 122953, Unclassified Coxiellaceae 358361, Unclassified Bacteria 358362, Desulfovibrio sp., Planctomyces sp., Unclassified Victivallaceae 358364, Tenacibaculum sp., Unclassified Phyllobacteriaceae 1520, Unclassified Oleiphilaceae 2222, Unclassified Colwelliaceae 50492, Oleibacter sp., Unclassified Cenarchaeaceae 248127, Unclassified Legionellaceae 309248, Unclassified Clostridiaceae 358372, Unclassified Pelagibacteraceae 1, Unclassified Bacteriovoracaceae 358374, Caldanaerocella sp., Unclassified Colwelliaceae 358382, Propionigenium sp., Francisella sp., Hyphomicrobium zavarzinii, Coraliomargarita sp., Desulfococcus sp., Clostridiisalibacter sp., Unclassified Methylophilaceae 392, Plesiocystis sp., Unclassified Bacteria 18392, Unclassified Saprospiraceae 46810, Kocuria sp., Hyphomicrobium sp., Halomonas sp., Unclassified Hyphomicrobiaceae 9813, Unclassified Bacteria 949, Unclassified Hyphomicrobiaceae 2139, Unclassified Bacteria 2152, Unclassified Rhodospirillaceae 56010, Fusibacter sp., Unclassified Pirellulaceae 977, Unclassified Oceanospirillaceae 24958, Unclassified Bacteria 81096, Unclassified Bacteria 340180, Unclassified Bacteria 4793, Unclassified Bacteria 5367, Unclassified Saprospiraceae 6824, Devosia sp., Unclassified Bacteria 213686, Unclassified Bacteria 36756, Cenarchaeum symbiosum, Unclassified Pirellulaceae 137577, Unclassified JTB36 186605, Unclassified Rhodospirillaceae 27702, Tepidibacter sp., Unclassified Oleiphilaceae 358415, Unclassified Flavobacteriaceae 358428, Unclassified Bacteria 345, Ucs1325 sp., Unclassified [Marinicellaceae] 31880, Unclassified Bacteria 235576, Spirochaeta sp., Unclassified Bacteria 2629, Unclassified Bacteria 6853, Thalassospira sp., Neptunomonas sp., Inquilinus sp., Unclassified Bacteria 190350, Unclassified [Amoebophilaceae] 358451, Cobetia sp., Unclassified Flavobacteriaceae 58290, Glaciecola sp., Unclassified Chitinophagaceae 1434, Unclassified Bacteria 2492, Polaribacter sp., Unclassified Bacteria 72622, Sulfurimonas sp., Unclassified Hyphomonadaceae 290, Methylobacterium sp., Unclassified Bacteria 4372, Unclassified Bacteria 68755, Unclassified Bacteria 84524, Unclassified Hyphomonadaceae 112803, Unclassified Pirellulaceae 358534, Unclassified Lachnospiraceae 358537, Unclassified Bacteria 1347, Finegoldia sp., Unclassified Caulobacteraceae 5440, Aquarickettsia rohweri, Unclassified Bacteria 27890, Unclassified NS11-12 76843, Unclassified Bacteria 358558, Unclassified Bacteria 358560, Unclassified Bacteria 358561, Unclassified Oceanospirillaceae 1096, Agarivorans sp., Unclassified Alteromonadaceae 358600, Achromobacter sp., Unclassified Bacteria 4991, Unclassified Bacteria 7594, Unclassified Bacteria 129144, Unclassified Bacteria 358629, Unclassified Alteromonadaceae 358630, Unclassified Oleiphilaceae 358632, Unclassified Alteromonadaceae 358633, Unclassified [Amoebophilaceae] 1274, Unclassified Oleiphilaceae 139262, Unclassified Desulfobacteraceae 251530, Balneola sp., Lactobacillus iners, Unclassified Bacteria 46553, Unclassified [Amoebophilaceae] 102524, Unclassified Phyllobacteriaceae 358715, Unclassified Bacteria 358716, Microbulbifer elongatus, Unclassified Flavobacteriaceae 358774, Unclassified Nitrospiraceae 9977, Unclassified Hyphomicrobiaceae 25362, Mycoplasma sp., Unclassified Lachnospiraceae 67609, Unclassified Hyphomicrobiaceae 106403, Unclassified Bacteria 155446, Unclassified Hyphomicrobiaceae 165088, Unclassified Alteromonadaceae 191057, Unclassified Rhodobacteraceae 220028, Unclassified Coxiellaceae 235007, Unclassified Colwelliaceae 358785, Unclassified Oleiphilaceae 358831, Unclassified Hyphomicrobiaceae 99435, Unclassified Bacteria 139823, Unclassified Oceanospirillaceae 181547, Unclassified Alteromonadaceae 209053, Unclassified Coxiellaceae 358916, Unclassified Coxiellaceae 358917, Unclassified Oleiphilaceae 358921, Unclassified Oleiphilaceae 358922, Unclassified Alteromonadaceae 358925


DNA analysis conducted by AquaBiomics LLC.

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Certificate of Analysis LRS G10.11

Certificate of Analysis: Live Reef Sand, Batch LRS G10.11

lrs.g10.11_Certificate_of_Analysis

    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in a batch of Live Reef Sand. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrs.g10.11
Batch Name G08-04-2025
Sample Date Oct 12, 2025 10:15 AM

Microbial Diversity

This sample contained DNA from 587 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families with 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Cenarchaeaceae
Type Percent of Community Genus Species
73 2.26 Nitrosopumilus Unknown
760 0.78 Nitrosopumilus Unknown
14173 0.45 Nitrosopumilus Unknown
20 0.29 Nitrosopumilus Unknown
640 0.16 Nitrosopumilus Unknown

Nitrite-Oxidizing Bacteria

Nitrospinaceae
Type Percent of Community Genus Species
218731 0.07 Nitrospina Unknown
3394 0.06 Nitrospina Unknown
The nitrifying community in this sample included 7 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marscesens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 422 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families with 3 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Coquimba ishizakii (Arthropoda), Bradyagaue sp. (Arthropoda), Robustaurila salebrosa (Arthropoda), Howeina sp. (Arthropoda), Xyrodromeus namarona (Arthropoda), Acarothrix sp. (Arthropoda), Simognathus sp. (Arthropoda), Microcaeculus sp. (Arthropoda), Halacarellus sp. (Arthropoda), Membranipora sp. (Arthropoda), Copidognathus sp. (Arthropoda), uncultured eukaryote 495827 (Ciliophora), Euplotes orientalis (Ciliophora), Glauconema trihymene (Ciliophora), Cothurnia salina (Ciliophora), Pseudokeronopsis carnea (Ciliophora), Eutintinnus cf. (Ciliophora), Pseudokeronopsis erythrina (Ciliophora), uncultured eukaryote 515761 (Ciliophora), uncultured marine 509090 (Diatomea), Rhaphoneis belgicae (Diatomea), Pauliella sp. (Diatomea), Psammodictyon constrictum (Diatomea), Pinnularia substreptoraphe (Diatomea), Pseudohimantidium pacificum (Diatomea), uncultured marine 511875 (Diatomea), uncultured marine 511894 (Diatomea), uncultured marine 510447 (Diatomea), Nitzschia sigma (Diatomea), uncultured marine 515394 (Diatomea), uncultured marine 515449 (Diatomea), Rhaphoneis sp. (Diatomea), Nitzschia longissima (Diatomea), Monosiga brevicollis (Eukaryota), Paraphysomonas imperforata (Eukaryota), Choanoeca perplexa (Eukaryota), uncultured marine 1786 (Eukaryota), Symbiochloris sp. (Eukaryota), Ulvophyceae sp. (Eukaryota), uncultured eukaryote 497070 (Eukaryota), eukaryotic picoplankton (Eukaryota), uncultured marine 510577 (Eukaryota), metagenome (Eukaryota), Paraphysomonas bandaiensis (Eukaryota), uncultured marine 515420 (Eukaryota), Paraphysomonas sp. (Eukaryota), uncultured eukaryote 515423 (Eukaryota), uncultured stramenopile 515425 (Eukaryota), uncultured eukaryote 515428 (Eukaryota), Hartaetosiga gracilis (Eukaryota), uncultured Corallinales 509248 (Florideophycidae), uncultured Corallinales 509705 (Florideophycidae), uncultured Corallinales 515553 (Florideophycidae), Aspidiophorus polystictos (Gastrotricha), Thraustochytriidae sp. (Labyrinthulomycetes), uncultured marine 509695 (Labyrinthulomycetes), uncultured marine 510033 (Labyrinthulomycetes), uncultured marine 510592 (Labyrinthulomycetes), uncultured marine 511885 (Labyrinthulomycetes), uncultured eukaryote 511886 (Labyrinthulomycetes)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Unclassified Legionellaceae 117161, BD2-13 sp., Unclassified Coxiellaceae 976, Nitrosopumilus sp., Unclassified Hyphomicrobiaceae 1489, Mycobacterium sp., Unclassified Legionellaceae 251934, Microbulbifer sp., Unclassified Bacteria 152381, Unclassified Bacteria 2368, Photobacterium sp., Unclassified Rhodobacteraceae 276, Unclassified Bacteria 6811, Unclassified Hyphomicrobiaceae 273, Unclassified Bacteria 11039, Unclassified Bacteria 336000, Unclassified Bacteria 10241, Bdellovibrio sp., Unclassified Bacteria 1394, Unclassified Pirellulaceae 977, Unclassified Hyphomicrobiaceae 10456, Unclassified Alteromonadaceae 336030, Unclassified Bacteria 467, Unclassified Hyphomicrobiaceae 85007, Unclassified Hyphomicrobiaceae 286, Unclassified Bacteria 26819, Unclassified Bacteria 122847, Unclassified Hyphomicrobiaceae 955, Unclassified Bacteria 1447, Unclassified Rhodospirillaceae 235424, Unclassified Alteromonadaceae 88, Unclassified Bacteria 5367, Unclassified Erythrobacteraceae 13907, Unclassified Simkaniaceae 797, Unclassified Bacteria 14595, Unclassified Kordiimonadaceae 336106, Unclassified Flavobacteriaceae 1198, Ucs1325 sp., Glaciecola sp., Photobacterium angustum, Oleibacter sp., Unclassified Bacteria 336144, Unclassified Bacteriovoracaceae 12300, Unclassified Bacteriovoracaceae 34824, Unclassified Bacteria 68084, Clostridium sp., Unclassified Pirellulaceae 26156, Unclassified Bacteria 336182, Balneola sp., Unclassified Bacteria 4384, Unclassified Bacteria 27456, Unclassified Bacteriovoracaceae 67724, Unclassified Bacteria 105166, Unclassified Hyphomonadaceae 817, Unclassified Saprospiraceae 6824, Unclassified Bacteria 107030, Unclassified Alteromonadaceae 14898, Unclassified Bacteria 28067, Unclassified Bacteria 265885, Unclassified Bacteria 336380, Unclassified Methylophilaceae 392, Unclassified Phyllobacteriaceae 704, Unclassified Bacteria 3423, Unclassified Bacteria 12849, Unclassified Kordiimonadaceae 26209, Unclassified Piscirickettsiaceae 167734, Nitrospina sp., Unclassified Bacteria 949, Planctomyces sp., Coraliomargarita sp., Unclassified Pirellulaceae 11232, Unclassified Bacteria 11765, Unclassified Bacteria 107029, Unclassified Bacteria 133151, Unclassified Kordiimonadaceae 220101, Unclassified NS11-12 318639, Verrucomicrobium sp., Unclassified Bacteria 336473, Unclassified Bacteria 6805, Unclassified Bacteria 336537, Unclassified Thiotrichaceae 336538, Unclassified Alteromonadaceae 585, Unclassified Bacteria 25624, Unclassified Bacteria 68414, Unclassified Cyanobacteriaceae 258835, Unclassified Pirellulaceae 336633, Unclassified Desulfovibrionaceae 96, Unclassified Bacteria 1141, Unclassified Bacteria 67898, Unclassified Bacteria 108985, Candidatus sp., Marinicella sp., Unclassified [Amoebophilaceae] 16688, Salinisphaera sp., Unclassified Bacteria 319001, Unclassified Verrucomicrobiaceae 336498, Unclassified Bacteria 336900, Francisella sp., Unclassified Rhodospirillaceae 982, Unclassified Oceanospirillaceae 37511, Unclassified Bacteria 235564, Unclassified Bacteria 336376, Unclassified Pirellulaceae 337087, Unclassified Kordiimonadaceae 337092, Unclassified Bacteria 337093, Unclassified Bacteria 904, Plesiocystis sp., Sulfurimonas sp., Unclassified Coxiellaceae 337313, Unclassified Bacteria 337325, Unclassified Pirellulaceae 337329, Maricaulis sp., Unclassified Lentisphaeraceae 1012, Arcobacter sp., Unclassified Ellin6075 28540, Unclassified Bacteria 191554, Unclassified Pirellulaceae 201307, Unclassified Alteromonadaceae 248093, Coxiella sp., Unclassified Xenococcaceae 337627, Unclassified Bacteria 337628, Unclassified Rhodobacteraceae 50575, Mycoplasma sp., Unclassified Bacteria 337985, Unclassified wb1_P06 338008, Unclassified Piscirickettsiaceae 338009, Unclassified Pirellulaceae 338010, Unclassified Bacteria 338021, Unclassified Bacteria 338023, Unclassified Bacteria 141, Deinococcus sp., Unclassified Bacteria 13895, Bacillus sp., Unclassified Cryomorphaceae 52791, Unclassified Alteromonadaceae 229824, Unclassified Rhodospirillaceae 338485, Unclassified OM60 338486, Unclassified HTCC2188 338489, Streptococcus sp., Unclassified Rhodospirillaceae 337323, Unclassified Pirellulaceae 339000, Unclassified Alteromonadaceae 200038, Unclassified Hyphomicrobiaceae 304640, HB2-32-21 sp., Anaerospora sp.


DNA analysis conducted by AquaBiomics LLC.

Posted on

Certificate of Analysis LRR G10.3

Certificate of Analysis: Live Reef Rubble, Batch LRR G10.3


    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in and on a batch of Live Reef Rubble. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrr.g10.3
Batch Name G08-04-2025
Sample Date Sep 21, 2025 9:00 AM

Microbial Diversity

This sample contained DNA from 388 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Cenarchaeaceae
Type Percent of Community Genus Species
73 1.14 Nitrosopumilus Unknown
108976 0.42 Nitrosopumilus Unknown
9677 0.40 Nitrosopumilus Unknown
31722 0.23 Unknown Unknown

Nitrite-Oxidizing Bacteria

Nitrospiraceae
Type Percent of Community Genus Species
318711 0.65 Unknown Unknown
324314 0.02 Unknown Unknown
The nitrifying community in this sample included 6 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marcescens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 289 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Glauconema trihymene (Ciliophora), Paracineta limbata (Ciliophora), Pseudovorticella paracratera (Ciliophora), Vaginicola crystallina (Ciliophora), Miamiensis avidus (Ciliophora), Psammodictyon constrictum (Diatomea), Navicula diserta (Diatomea), Rhaphoneis belgicae (Diatomea), Monosiga brevicollis (Eukaryota), Halothrix ambigua (Eukaryota), Choanoeca perplexa (Eukaryota), Scytosiphon lomentaria (Eukaryota), uncultured Corallinales sq21317 (Florideophycidae), uncultured Corallinales sq52775 (Florideophycidae), uncultured Corallinales sq328954 (Florideophycidae), Melobesioideae sp. (Florideophycidae), uncultured Corallinales sq141964 (Florideophycidae), uncultured Corallinales sq480227 (Florideophycidae), uncultured Corallinales sq480246 (Florideophycidae), Synarthrophyton patena (Florideophycidae), Gastroclonium pacificum (Florideophycidae), uncultured Corallinales sq496025 (Florideophycidae), Peyssonnelia novae-hollandiae (Florideophycidae), uncultured Corallinales sq482123 (Florideophycidae), Mastophoropsis canaliculata (Florideophycidae), uncultured Corallinales sq483215 (Florideophycidae), uncultured Corallinales sq483219 (Florideophycidae), uncultured Corallinales sq487209 (Florideophycidae), Mesophyllum lichenoides (Florideophycidae), Mesophyllum vancouveriense (Florideophycidae), uncultured Corallinales sq499158 (Florideophycidae), uncultured Corallinales sq495991 (Florideophycidae), uncultured Corallinales sq496042 (Florideophycidae), uncultured Corallinales sq502684 (Florideophycidae), uncultured Corallinales sq502718 (Florideophycidae), uncultured Corallinales sq502719 (Florideophycidae), uncultured Corallinales sq502720 (Florideophycidae), uncultured Corallinales sq502721 (Florideophycidae), uncultured Corallinales sq502722 (Florideophycidae), uncultured Corallinales sq502723 (Florideophycidae), uncultured Corallinales sq502724 (Florideophycidae), Chaetonotus sp. (Gastrotricha), Chaetonotus neptuni (Gastrotricha), uncultured eukaryote sq72 (Labyrinthulomycetes), Oblongichytrium sp. (Labyrinthulomycetes), uncultured marine sq2482 (Labyrinthulomycetes), uncultured eukaryote sq1120 (Labyrinthulomycetes), uncultured eukaryote sq269 (Labyrinthulomycetes), Thraustochytriidae sp. (Labyrinthulomycetes), uncultured eukaryote sq498118 (Labyrinthulomycetes), Aplanochytrium stocchinoi (Labyrinthulomycetes), Labyrinthuloides minuta (Labyrinthulomycetes), uncultured eukaryote sq496005 (Labyrinthulomycetes), uncultured eukaryote sq502678 (Labyrinthulomycetes), Aplanochytrium sp. (Labyrinthulomycetes), uncultured eukaryote sq502731 (Labyrinthulomycetes)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Unclassified Desulfobacteraceae 122784, Unclassified Bacteria 46834, Unclassified Flavobacteriaceae 30384, Nitrosopumilus sp., Unclassified Flavobacteriaceae 318678, Unclassified Flavobacteriaceae 318679, Unclassified Flavobacteriaceae 318680, Unclassified Rhodobacteraceae 41, Unclassified Bacteria 112664, Unclassified Bacteria 106413, Unclassified Nitrospiraceae 318711, Unclassified Flavobacteriaceae 191510, Unclassified Bacteria 218750, Olleya sp., Unclassified Flavobacteriaceae 328, Unclassified Bacteria 1141, Unclassified Bacteria 40276, Unclassified Bacteria 949, Unclassified Bacteria 11774, Unclassified JdFBGBact 5336, Unclassified Phyllobacteriaceae 1255, Unclassified Piscirickettsiaceae 318778, Inquilinus sp., Unclassified Bacteria 2905, Unclassified Flammeovirgaceae 5837, Unclassified Bacteria 67570, Unclassified Bacteria 318840, Unclassified Verrucomicrobiaceae 71266, Unclassified Bacteria 35320, Muricauda sp., Glaciecola sp., Unclassified Hyphomicrobiaceae 9813, Unclassified Rhodobacteraceae 200155, Unclassified Saprospiraceae 1666, Unclassified Pirellulaceae 4596, Unclassified Oceanospirillaceae 13896, Unclassified NB1-i 319042, Unclassified Flavobacteriaceae 319043, Unclassified Piscirickettsiaceae 319044, Unclassified Flammeovirgaceae 9945, Unclassified Bacteria 209230, Unclassified Flavobacteriaceae 248662, Unclassified Piscirickettsiaceae 319099, HTCC sp., Unclassified Cenarchaeaceae 31722, Unclassified Flammeovirgaceae 12276, Fulvivirga sp., Unclassified Pirellulaceae 319291, Unclassified Flavobacteriaceae 319293, Unclassified Phycisphaeraceae 25388, Bacteriovorax sp., Unclassified Pirellulaceae 319412, Unclassified Bacteria 319416, Unclassified Thiotrichaceae 319417, Unclassified Flavobacteriaceae 3, Unclassified Bacteria 3025, Thalassomonas sp., Candidatus sp., Unclassified Flammeovirgaceae 109041, Unclassified Ellin6075 114540, Unclassified Bacteria 319590, Unclassified Bacteria 319593, Unclassified Bacteria 319596, Unclassified Flavobacteriaceae 319598, Unclassified Bacteria 668, Unclassified JdFBGBact 1704, Unclassified Bacteria 2783, Unclassified Clostridiaceae 5601, Unclassified Kordiimonadaceae 14565, Unclassified Xenococcaceae 319787, Unclassified Desulfobacteraceae 319789, Unclassified Desulfobacteraceae 319792, Arcobacter sp., Unclassified Bacteria 320084, Unclassified [Amoebophilaceae] 320087, Unclassified Bacteria 320089, Unclassified Bacteria 6932, Unclassified Bacteria 320449, Unclassified HTCC2089 320458, Unclassified Rhodobacteraceae 102, Unclassified Desulfobacteraceae 25546, Unclassified PAUC26f 71564, Mycobacterium sp., Unclassified Bacteria 320934, Unclassified Rhodothermaceae 320935, Unclassified Bacteria 320937, Unclassified Bacteria 193217, Unclassified Bacteria 321620, Unclassified Bacteria 321631, Unclassified Oceanospirillaceae 321634, Unclassified Saprospiraceae 321636, Unclassified Bacteria 321638, Unclassified Phyllobacteriaceae 9876, Corynebacterium sp., Unclassified Flammeovirgaceae 322639, Unclassified Bacteria 322648, Unclassified Bacteria 322649, Unclassified Bacteria 322661, Unclassified Rhodobacteraceae 322664, Unclassified Bacteria 322672, Unclassified Oceanospirillaceae 322679, Unclassified Bacteria 322689, Unclassified Bacteria 322690, Unclassified Desulfobacteraceae 322695, Unclassified Desulfobacteraceae 322701, Unclassified Bacteria 322704, Unclassified Bacteria 3692, Unclassified Bacteria 10830, Unclassified Bacteria 324307, Unclassified Bacteria 324309, Unclassified Phyllobacteriaceae 324311, Unclassified Bacteria 324313, Unclassified Nitrospiraceae 324314, Unclassified Xenococcaceae 324323, Unclassified Bacteria 324325, Unclassified Flammeovirgaceae 324326, Unclassified Bacteria 324329, Unclassified Bacteria 324330, Unclassified Rhodobacteraceae 324332, Unclassified Bacteria 324334, Unclassified Bacteria 324336, Unclassified Bacteria 324338, Unclassified Rhodobacteraceae 324340, Unclassified Rhodobacteraceae 324341, Unclassified Rhodobacteraceae 324342, Unclassified Bacteria 324344, Unclassified Bacteria 324348, Unclassified Thiotrichaceae 324354, Unclassified Flammeovirgaceae 324360, Spongiibacter sp., Unclassified Bacteria 324369, Unclassified Bacteria 324374, Unclassified Piscirickettsiaceae 324383, Unclassified Flammeovirgaceae 324388


DNA analysis conducted by AquaBiomics LLC.

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Certificate of Analysis LRR G9.2

Certificate of Analysis: Live Reef Rubble, Batch LRR G9.2

lrr.g9.2_Certificate_of_Analysis

    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in and on a batch of Live Reef Rubble. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrr.g9.2
Batch Name G04-01-2025
Sample Date May 28, 2025 8:00 AM

Microbial Diversity

This sample contained DNA from 763 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Cenarchaeaceae
Type Percent of Community Genus Species
73 0.82 Nitrosopumilus Unknown
2996 0.17 Nitrosopumilus Unknown
640 0.14 Nitrosopumilus Unknown
760 0.09 Nitrosopumilus Unknown
3535 0.04 Cenarchaeum symbiosum
14134 0.03 Nitrosopumilus Unknown
10731 0.02 Unknown Unknown
70968 0.02 Nitrosopumilus Unknown
14173 0.01 Nitrosopumilus Unknown
248127 0.01 Unknown Unknown
265528 0.01 Nitrosopumilus Unknown
265662 0.01 Nitrosopumilus Unknown

Nitrite-Oxidizing Bacteria

Nitrospiraceae
Type Percent of Community Genus Species
25186 0.01 Unknown Unknown
55498 0.01 Unknown Unknown
The nitrifying community in this sample included 14 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marcescens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 726 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Apomatus voightae (Annelida), Chitinopoma serrula (Annelida), Novafabricia sp. (Annelida), Protula sp. (Annelida), Humulus lupulus (Ascomycota), Pseudogymnoascus pannorum (Ascomycota), Blastomyces dermatitidis (Ascomycota), Clavispora lusitaniae (Ascomycota), Ophiosphaerella herpotricha (Ascomycota), Medeolaria farlowii (Ascomycota), Nanoscypha tetraspora (Ascomycota), Graminopassalora graminis (Ascomycota), Aspergillus penicillioides (Ascomycota), [Candida] ruelliae (Ascomycota), Neoascochyta exitialis (Ascomycota), Postia placenta (Basidiomycota), Malassezia restricta (Basidiomycota), Nidula niveotomentosa (Basidiomycota), Wallemia sebi (Basidiomycota), Amylostereum laevigatum (Basidiomycota), Psathyrella candolleana (Basidiomycota), Marchandiobasidium aurantiacum (Basidiomycota), Lepisosteus oculatus (Basidiomycota), Resinicium furfuraceum (Basidiomycota), metagenome (Centrohelida), uncultured marine sq3673 (Centrohelida), uncultured marine sq15485 (Cercozoa), Paradinium poucheti (Cercozoa), marine metagenome (Cercozoa), Gromia oviformis (Cercozoa), Phaseoleae environmental (Cercozoa), uncultured marine sq421865 (Cercozoa), Metopion fluens (Cercozoa), uncultured marine sq422202 (Cercozoa), Haplosporidian parasite (Cercozoa), Allantion sp. (Cercozoa), metagenome (Cercozoa), Ventrifissura sp. (Cercozoa), uncultured eukaryote sq2529 (Cercozoa), Reckertia gemma (Cercozoa), uncultured Cercozoa sq327008 (Cercozoa), uncultured marine sq405854 (Cercozoa), uncultured marine sq417269 (Cercozoa), Nuclearia-like filose (Cercozoa), uncultured marine sq425163 (Cercozoa), uncultured marine sq425175 (Cercozoa), uncultured marine sq425196 (Cercozoa), uncultured marine sq425203 (Cercozoa), Pseudoamphisiella quadrinucleata (Ciliophora), Cinetochilum ovale (Ciliophora), uncultured eukaryote sq2287 (Ciliophora), Diophrys parappendiculata (Ciliophora), Loxophyllum perihoplophorum (Ciliophora), Varistrombidium kielum (Ciliophora), Protocruzia adherens (Ciliophora), Diophrys apoligothrix (Ciliophora), Uroleptus pisces (Ciliophora), uncultured eukaryote sq201 (Ciliophora), Protogastrostyla pulchra (Ciliophora), uncultured alveolate sq33232 (Ciliophora), uncultured alveolate sq60809 (Ciliophora), Hemigastrostyla enigmatica (Ciliophora), Miamiensis avidus (Ciliophora), uncultured alveolate sq416988 (Ciliophora), uncultured eukaryote sq421956 (Cryptomycota), uncultured Chytridiomycota sq267780 (Cryptomycota), Arachis hypogaea (Cyanobacteria), Navicula arenaria (Diatomea), uncultured stramenopile sq152522 (Diatomea), Haslea ostrearia (Diatomea), Craticula pseudocitrus (Diatomea), Psammodictyon constrictum (Diatomea), uncultured eukaryote sq152348 (Diatomea), uncultured eukaryote sq198850 (Diatomea), Nitzschia sp. (Diatomea), Eunotia sp. (Diatomea), uncultured marine sq6590 (Diatomea), uncultured stramenopile sq71371 (Diatomea), uncultured marine sq267941 (Diatomea), Tryblionella apiculata (Diatomea), uncultured eukaryote sq267631 (Diatomea), uncultured stramenopile sq403231 (Diatomea), Thalassiosira hendeyi (Diatomea), Nitzschia cf. (Diatomea), uncultured marine sq421650 (Diatomea), uncultured marine sq421651 (Diatomea), uncultured eukaryote sq6222 (Diatomea), uncultured eukaryote sq402670 (Diatomea), Protokeelia bassonii (Diatomea), Nitzschia longissima (Diatomea), Stauroneis kriegeri (Diatomea), uncultured marine sq421859 (Diatomea), Bacillariophyta sp. (Diatomea), Navicula diserta (Diatomea), uncultured marine sq141668 (Diatomea), uncultured marine sq305339 (Diatomea), uncultured marine sq409036 (Diatomea), uncultured stramenopile sq422449 (Diatomea), uncultured eukaryote sq206394 (Diatomea), Pleurosigma sp. (Diatomea), uncultured eukaryote sq402714 (Diatomea), Haslea spicula (Diatomea), uncultured eukaryote sq52878 (Diatomea), uncultured marine sq60591 (Diatomea), uncultured marine sq186955 (Diatomea), uncultured eukaryote sq325512 (Diatomea), uncultured marine sq402712 (Diatomea), uncultured stramenopile sq402770 (Diatomea), Amphora cf. (Diatomea), uncultured stramenopile sq423209 (Diatomea), Bacillaria paxillifer (Diatomea), uncultured eukaryote sq423354 (Diatomea), uncultured marine sq45551 (Diatomea), uncultured marine sq152470 (Diatomea), uncultured marine sq305938 (Diatomea), Hippodonta capitata (Diatomea), uncultured eukaryote sq402881 (Diatomea), uncultured marine sq403095 (Diatomea), Cylindrotheca fusiformis (Diatomea), uncultured marine sq423614 (Diatomea), uncultured marine sq129510 (Diatomea), uncultured eukaryote sq268651 (Diatomea), Amphora coffeiformis (Diatomea), Tursiocola cf. (Diatomea), uncultured stramenopile sq345420 (Diatomea), uncultured eukaryote sq345551 (Diatomea), uncultured marine sq383879 (Diatomea), uncultured eukaryote sq402676 (Diatomea), uncultured marine sq402720 (Diatomea), Amphora laevis (Diatomea), Navicula vara (Diatomea), uncultured marine sq403444 (Diatomea), uncultured eukaryote sq404676 (Diatomea), Nitzschia filiformis (Diatomea), uncultured marine sq407792 (Diatomea), uncultured marine sq407850 (Diatomea), Amphora sp. (Diatomea), uncultured marine sq407871 (Diatomea), uncultured marine sq416844 (Diatomea), uncultured marine sq416861 (Diatomea), uncultured marine sq417458 (Diatomea), uncultured eukaryote sq417472 (Diatomea), uncultured marine sq424399 (Diatomea), uncultured marine sq425138 (Diatomea), uncultured marine sq425141 (Diatomea), uncultured marine sq425142 (Diatomea), uncultured marine sq425144 (Diatomea), uncultured eukaryote sq425147 (Diatomea), uncultured marine sq425198 (Diatomea), Craticula cuspidata (Diatomea), uncultured stramenopile sq425202 (Diatomea), uncultured eukaryote sq425205 (Diatomea), uncultured marine sq425210 (Diatomea), uncultured stramenopile sq425237 (Diatomea), uncultured eukaryote sq425244 (Diatomea), uncultured eukaryote sq421270 (Dinoflagellata), Symbiodinium sp. (Dinoflagellata), Heterocapsa triquetra (Dinoflagellata), uncultured eukaryote sq422742 (Dinoflagellata), uncultured eukaryote sq208881 (Dinoflagellata), uncultured eukaryote sq423011 (Dinoflagellata), uncultured eukaryote sq1314 (Dinoflagellata), uncultured eukaryote sq403126 (Dinoflagellata), uncultured eukaryote sq5615 (Dinoflagellata), Leiocephalium pseudosanguineum (Dinoflagellata), uncultured eukaryote sq425157 (Dinoflagellata), uncultured eukaryote sq425195 (Dinoflagellata), uncultured kinetoplastid sq403045 (Euglenozoa), uncultured eukaryote sq34327 (Euglenozoa), Notosolenus urceolatus (Euglenozoa), Diplonema sp. (Euglenozoa), uncultured eukaryote sq32619 (Eukaryota), Jakobida sp. (Eukaryota), Spumella-like (Eukaryota), Heribaudiella fluviatilis (Eukaryota), Ulvophyceae sp. (Eukaryota), Vannella sp. (Eukaryota), Pseudulvella consociata (Eukaryota), metagenome (Eukaryota), eukaryote clone (Eukaryota), uncultured eukaryote sq3043 (Eukaryota), Pirum gemmata (Eukaryota), Carinoma tremaphoros (Eukaryota), Rhinomonas pauca (Eukaryota), Symbiochloris sp. (Eukaryota), uncultured eukaryote sq35940 (Eukaryota), Ulvella viridis (Eukaryota), Ancoracysta twista (Eukaryota), uncultured eukaryote sq403956 (Eukaryota), Paramoeba aestuarina (Eukaryota), uncultured eukaryote sq417176 (Eukaryota), Epipyxis aureus (Eukaryota), Peyssonnelia novae-hollandiae (Florideophycidae), uncultured Corallinales sq32421 (Florideophycidae), Renouxia sp. (Florideophycidae), uncultured Corallinales sq152450 (Florideophycidae), Peyssonnelia capensis (Florideophycidae), uncultured Corallinales sq21317 (Florideophycidae), Peyssonnelia sp. (Florideophycidae), Melobesioideae sp. (Florideophycidae), uncultured Corallinales sq423904 (Florideophycidae), uncultured Corallinales sq32406 (Florideophycidae), uncultured Corallinales sq424414 (Florideophycidae), Pirsonia verrucosa (Incertae_Sedis), cf. Developayella (Incertae_Sedis), uncultured microeukaryote sq56470 (Kathablepharidae), Katablepharis remigera (Kathablepharidae), uncultured eukaryote sq72 (Labyrinthulomycetes), Oblongichytrium sp. (Labyrinthulomycetes), uncultured eukaryote sq47361 (Labyrinthulomycetes), uncultured eukaryote sq67219 (Labyrinthulomycetes), Stellarchytrium dubum (Labyrinthulomycetes), uncultured eukaryote sq222516 (Labyrinthulomycetes), Schizochytrium minutum (Labyrinthulomycetes), uncultured eukaryote sq2132 (Labyrinthulomycetes), Thraustochytriidae sp. (Labyrinthulomycetes), uncultured stramenopile sq21358 (Labyrinthulomycetes), uncultured marine sq421293 (Labyrinthulomycetes), unidentified (Labyrinthulomycetes), Thraustochytrium pachydermum (Labyrinthulomycetes), Thraustochytrium multirudimentale (Labyrinthulomycetes), uncultured eukaryote sq47616 (Labyrinthulomycetes), uncultured marine sq260178 (Labyrinthulomycetes), uncultured eukaryote sq423012 (Labyrinthulomycetes), uncultured eukaryote sq423214 (Labyrinthulomycetes), labyrinthulid quahog (Labyrinthulomycetes), uncultured eukaryote sq403047 (Labyrinthulomycetes), uncultured marine sq2482 (Labyrinthulomycetes), Aplanochytrium stocchinoi (Labyrinthulomycetes), uncultured marine sq79304 (Labyrinthulomycetes), uncultured eukaryote sq144605 (Labyrinthulomycetes), uncultured eukaryote sq425159 (Labyrinthulomycetes), Aplanochytrium blankum (Labyrinthulomycetes), uncultured eukaryote sq425181 (Labyrinthulomycetes), uncultured marine sq425184 (Labyrinthulomycetes), uncultured marine sq425190 (Labyrinthulomycetes), Mucor brunneogriseus (Mucoromycota), Phytophthora nicotianae (Peronosporomycetes), uncultured stramenopile sq402693 (Peronosporomycetes), Gilliesia graminea (Phragmoplastophyta), Erithalis fruticosa (Phragmoplastophyta), Humulus lupulus (Phragmoplastophyta), Ceratiola ericoides (Phragmoplastophyta), Erythranthe guttata (Phragmoplastophyta), Chaunochiton kappleri (Phragmoplastophyta), Citrus clementina (Phragmoplastophyta), Gossypium barbadense (Phragmoplastophyta), Ophiorrhiza pumila (Phragmoplastophyta), Takhtajania perrieri (Phragmoplastophyta), Cosmelia rubra (Phragmoplastophyta), Dulacia candida (Phragmoplastophyta), Malania oleifera (Phragmoplastophyta), Hordeum vulgare (Phragmoplastophyta), Gossypium hirsutum (Phragmoplastophyta), Plantago patagonica (Phragmoplastophyta), Lupinus angustifolius (Phragmoplastophyta), Mesorhizobium sp. (Phragmoplastophyta), Oenothera odorata (Phragmoplastophyta), Nothapodytes nimmoniana (Phragmoplastophyta), Cucumis sativus (Phragmoplastophyta), Trapa bispinosa (Phragmoplastophyta), Phaseoleae environmental (Phragmoplastophyta), Medicago truncatula (Phragmoplastophyta), Mida salicifolia (Phragmoplastophyta), Carya cathayensis (Phragmoplastophyta), Ipomoea nil (Phragmoplastophyta), Gratiola aurea (Phragmoplastophyta), Gossypium arboreum (Phragmoplastophyta), Phaseolus vulgaris (Phragmoplastophyta), Lolium perenne (Phragmoplastophyta), Ziziphus jujuba (Phragmoplastophyta), Datiscaceae environmental (Phragmoplastophyta), Salvadora angustifolia (Phragmoplastophyta), Corchorus olitorius (Phragmoplastophyta), Atalantia buxifolia (Phragmoplastophyta), Monarda fistulosa (Phragmoplastophyta), Callirhoe involucrata (Phragmoplastophyta), Gymnosiphon capitatus (Phragmoplastophyta), uncultured organism sq425228 (Phragmoplastophyta), Octomeles sumatrana (Phragmoplastophyta), hydrothermal vent (Retaria)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Unclassified Rhodobacteraceae 1072, Unclassified Oceanospirillaceae 721, Unclassified Rhodobacteraceae 85106, Unclassified Rhodobacteraceae 232, Unclassified Rhodobacteraceae 370, Unclassified Bacteria 10206, Unclassified Rhodobacteraceae 694, Alteromonas sp., Unclassified Oceanospirillaceae 81, Unclassified Rhodobacteraceae 427, Nitrosopumilus sp., Unclassified Rhodobacteraceae 451, Marivita sp., Unclassified Hyphomicrobiaceae 105, Unclassified Rhodobacteraceae 41, Unclassified Enterobacteriaceae 106767, Unclassified Rhodobacteraceae 1445, Sphingomonas sp., Marinicella sp., Unclassified Bacteria 1246, Unclassified Bacteria 93406, Unclassified Hyphomicrobiaceae 104, Unclassified Rhodobacteraceae 270944, Unclassified Hyphomicrobiaceae 3321, Unclassified Rhodobacteraceae 2230, HTCC sp., Unclassified Bacteria 5265, Pseudomonas sp., Unclassified Rhodobacteraceae 34, Unclassified Bacteria 8266, Unclassified Bacteria 11494, Unclassified Hyphomicrobiaceae 9709, Unclassified Rhodobacteraceae 9820, Unclassified Rhodobacteraceae 733, Unclassified JdFBGBact 2296, Unclassified Alteromonadaceae 88, Unclassified Rhodobacteraceae 270975, Unclassified Hyphomonadaceae 290, Unclassified Bacteria 1485, Planctomyces sp., Unclassified Bacteria 11007, Unclassified Pirellulaceae 270988, Unclassified Rhodobacteraceae 270994, Methylotenera mobilis, Unclassified Rhodospirillaceae 3251, Unclassified Bacteria 270996, Unclassified Hyphomonadaceae 1292, Unclassified Bacteria 12211, Unclassified Bacteria 33589, Unclassified Hyphomicrobiaceae 14109, Unclassified Rhodobacteraceae 251, Unclassified Rhodospirillaceae 2209, Unclassified Rhodobacteraceae 4291, Unclassified OM60 46521, Unclassified Hyphomicrobiaceae 4524, Unclassified Bacteria 9721, Rubritalea sp., Unclassified HTCC2188 50709, Unclassified Hyphomicrobiaceae 1489, Hyphomonas sp., Plesiocystis sp., Unclassified Bacteria 31778, Curtobacterium sp., Unclassified Bacteria 4430, Unclassified Alteromonadaceae 14898, Unclassified Bacteria 19579, Unclassified Rickettsiaceae 35566, Unclassified Phyllobacteriaceae 47571, Roseivivax sp., Unclassified Comamonadaceae 1574, Unclassified Hyphomonadaceae 1669, Ruegeria sp., Achromobacter sp., Unclassified Bacteria 5997, Unclassified Bacteria 10289, Unclassified Bacteria 180129, Unclassified Bacteria 265295, Unclassified Kordiimonadaceae 271018, Unclassified Alteromonadaceae 271099, Unclassified Phyllobacteriaceae 3695, Unclassified Bacteria 37669, Unclassified HTCC2188 271108, Unclassified Bacteria 359, Unclassified Bacteria 1605, Unclassified Rhodospirillaceae 10028, Unclassified Bacteria 10152, Vogesella sp., Unclassified Rhodobacteraceae 271126, Unclassified Bacteria 378, Unclassified Rhodospirillaceae 678, Unclassified Flammeovirgaceae 1479, Unclassified Bacteria 4258, Unclassified Sinobacteraceae 220323, Unclassified Oceanospirillaceae 271137, Unclassified Rhodobacteraceae 271150, Unclassified Bacteria 7192, Halomonas sp., Unclassified Phyllobacteriaceae 40380, Unclassified J115 271162, Unclassified Lentisphaeraceae 137, Unclassified Bacteria 26049, Unclassified Rhodobacteraceae 271060, Unclassified Oceanospirillaceae 271163, Unclassified Piscirickettsiaceae 3347, Unclassified SC3-41 10556, Unclassified Bacteria 99471, Unclassified Rhodobacteraceae 158348, Unclassified Hyphomicrobiaceae 271243, Mycobacterium sp., Unclassified Bacteria 77, Unclassified Bacteria 12277, Unclassified Oceanospirillaceae 181691, Unclassified Bacteria 271258, Pseudonocardia sp., Unclassified Bacteria 791, Unclassified Bacteria 43059, Unclassified Bacteria 46553, Microbulbifer sp., Unclassified Oceanospirillaceae 271303, Unclassified Rhodobacteraceae 271336, Unclassified Rhodobacteraceae 271337, Unclassified Rhodobacteraceae 271338, Unclassified Saprospiraceae 364, Unclassified Rhodospirillaceae 773, Unclassified Bacteria 16462, Unclassified Bacteria 62060, Unclassified Pirellulaceae 109572, Unclassified Oceanospirillaceae 169470, Unclassified Haliangiaceae 271403, Unclassified Bacteria 1800, Unclassified Bacteria 27069, Unclassified HTCC2188 56473, Unclassified Bacteria 74060, Unclassified Bacteria 81096, Unclassified Bacteria 99482, Unclassified Hyphomonadaceae 137750, Unclassified Bacteria 141105, Unclassified Bacteria 253202, Unclassified Bacteria 265304, Unclassified Oceanospirillaceae 271438, Unclassified Rhodobacteraceae 271489, Unclassified Enterobacteriaceae 271490, Unclassified Rhodobacteraceae 271492, Unclassified Alteromonadaceae 771, Unclassified Bacteria 949, Unclassified Coxiellaceae 2257, Streptococcus infantis, Cenarchaeum symbiosum, Unclassified Hyphomonadaceae 4559, Actinomyces sp., Coraliomargarita sp., Luteolibacter sp., Unclassified Rhodobacteraceae 241607, Unclassified Coxiellaceae 265326, Unclassified Bacteria 265331, Unclassified Oceanospirillaceae 271546, Unclassified Oceanospirillaceae 271547, Unclassified HTCC2089 271620, Unclassified Rhodobacteraceae 271621, Unclassified Rhodobacteraceae 271622, Unclassified Rhodobacteraceae 271623, Unclassified Rhodobacteraceae 271624, Unclassified Rhodobacteraceae 271625, Unclassified Rhodobacteraceae 271626, Unclassified Enterobacteriaceae 271627, Unclassified Bacteria 710, Unclassified Hyphomicrobiaceae 9813, Unclassified Pirellulaceae 31779, Unclassified Xenococcaceae 43854, Unclassified Bacteria 108068, Unclassified Legionellaceae 117826, Unclassified Oceanospirillaceae 163913, Unclassified Bacteria 195182, Unclassified Coxiellaceae 265457, Unclassified Oceanospirillaceae 271699, Unclassified Oceanospirillaceae 271700, Unclassified Oceanospirillaceae 271701, Unclassified Rhodobacteraceae 271826, Unclassified Hyphomonadaceae 271828, Unclassified Rhodobacteraceae 271829, Unclassified OM60 271830, Unclassified OM60 271831, Unclassified HTCC2188 271832, Unclassified Hyphomicrobiaceae 273, Unclassified J115 635, Staphylococcus aureus, Nautella sp., Ucs1325 sp., Unclassified Bacteria 2338, Unclassified Simkaniaceae 2541, Unclassified Phyllobacteriaceae 2578, Photobacterium sp., Unclassified Alteromonadaceae 3157, Unclassified Cenarchaeaceae 10731, Unclassified Bacteria 43183, Unclassified Bacteria 68430, Unclassified Alteromonadaceae 74427, Unclassified Bacteria 81476, Unclassified Rhodobacteraceae 131542, Unclassified Rhodobacteraceae 131553, Unclassified Hyphomicrobiaceae 142641, Unclassified Hyphomicrobiaceae 143275, Unclassified Piscirickettsiaceae 150286, Unclassified Coxiellaceae 265305, Rickettsia sp., Unclassified Bacteria 265531, Unclassified Hyphomonadaceae 266256, Unclassified Bacteria 266369, Unclassified Hyphomicrobiaceae 271307, Unclassified Hyphomicrobiaceae 271949, Unclassified Phyllobacteriaceae 271951, Unclassified Piscirickettsiaceae 271952, Unclassified Oceanospirillaceae 271953, Unclassified Rhodobacteraceae 271954, Unclassified Oceanospirillaceae 271955, Unclassified Rhodobacteraceae 271956, Unclassified HTCC2188 271957, Unclassified Bacteria 271958, Unclassified Oceanospirillaceae 271959, Unclassified Hyphomonadaceae 272183, Unclassified Bacteria 272184, Unclassified Bacteria 272187, Unclassified Rhodobacteraceae 272189, Unclassified Rhodobacteraceae 272192, Unclassified Enterobacteriaceae 272193, Pseudoalteromonas sp., Unclassified Bacteria 30, Unclassified Oceanospirillaceae 524, Maricaulis sp., Candidatus sp., Unclassified Rhodobacteraceae 1312, Unclassified Phyllobacteriaceae 1520, Unclassified Bacteria 2299, Unclassified Bacteria 3308, Unclassified Kordiimonadaceae 3562, Streptococcus sp., Unclassified Lentisphaeraceae 15113, Unclassified Lentisphaeraceae 16575, Bacillus sp., Unclassified Nitrospiraceae 25186, Unclassified Kordiimonadaceae 26209, Unclassified Bacteria 26591, Roseivirga sp., Unclassified Bacteria 36764, Hirschia baltica, Unclassified Rhodobacteraceae 52828, Unclassified Nitrospiraceae 55498, Unclassified Bacteria 56183, Unclassified Coxiellaceae 66758, Unclassified Bacteria 68755, Unclassified Bacteria 93586, Unclassified [Amoebophilaceae] 93818, Unclassified Hyphomicrobiaceae 106403, Unclassified Bacteria 106956, Desulfococcus sp., Unclassified Coxiellaceae 115137, Unclassified Hyphomonadaceae 144443, Unclassified Hyphomicrobiaceae 150024, Unclassified Oceanospirillaceae 151333, Unclassified Micrococcaceae 154917, Unclassified Hyphomicrobiaceae 167557, Unclassified mitochondria 196497, Unclassified Phyllobacteriaceae 200008, Unclassified Bacteria 212926, Unclassified J115 213552, Unclassified J115 218430, Unclassified Legionellaceae 220528, Unclassified Bacteria 220730, Unclassified Cenarchaeaceae 248127, Unclassified Lentisphaeraceae 265415, Unclassified Bacteria 265506, Unclassified Bacteria 265533, Unclassified Legionellaceae 265612, Unclassified Saprospiraceae 265667, Unclassified Bacteria 265726, Unclassified Bacteria 265727, Unclassified Rickettsiaceae 265790, Unclassified Erythrobacteraceae 265879, Unclassified Coxiellaceae 265880, Unclassified Bacteria 266674, Alcanivorax sp., Unclassified Bacteria 267176, Unclassified Bacteria 267904, Kingella sp., Unclassified Oceanospirillaceae 271114, Unclassified Oceanospirillaceae 272453, Unclassified Rhodospirillaceae 272454, Unclassified Hyphomonadaceae 272456, Unclassified Piscirickettsiaceae 272457, Unclassified Phyllobacteriaceae 272459, Unclassified Bacteria 272460, Unclassified Bacteria 272461, Unclassified Bacteria 272462, Unclassified Oceanospirillaceae 272464, Unclassified Hyphomonadaceae 272466, Unclassified Hyphomonadaceae 272467, Unclassified Rhodobacteraceae 272469, Unclassified Rhodobacteraceae 272470, Unclassified Rhodobacteraceae 272471, Unclassified Rhodobacteraceae 272472, Unclassified Bacteria 272475, Unclassified Bacteria 272476, Unclassified Bacteria 272477, Unclassified Rhodobacteraceae 272478, Unclassified Phyllobacteriaceae 272479, Unclassified Rhodobacteraceae 273258, Unclassified Rhodobacteraceae 273259, Unclassified Rhodobacteraceae 273260, Unclassified Rhodospirillaceae 273263, Unclassified Phyllobacteriaceae 273268, Unclassified Hyphomicrobiaceae 273269, Unclassified Hyphomicrobiaceae 273270, Unclassified Hyphomicrobiaceae 273271, Unclassified Hyphomonadaceae 273272, Unclassified Bacteria 273274, Unclassified Alteromonadaceae 273275, Unclassified Hyphomicrobiaceae 273276, Unclassified Hyphomicrobiaceae 273277, Unclassified Rhodobacteraceae 273278, Unclassified Rhodospirillaceae 273279, Unclassified Rhodospirillaceae 273280, Unclassified Rhodospirillaceae 273281, Unclassified Rhodospirillaceae 273282, Unclassified Rhodospirillaceae 273284, Unclassified OM60 273292, Unclassified Rhodobacteraceae 273295, Unclassified Rhodobacteraceae 273296, Unclassified Rhodobacteraceae 273297, Unclassified Rhodobacteraceae 273300, Unclassified Rhodobacteraceae 273301, Unclassified Rhodobacteraceae 273302, Unclassified Rhodobacteraceae 273303, Unclassified Rhodobacteraceae 273304, Unclassified Rhodobacteraceae 273305, Unclassified Rhodobacteraceae 273306, Unclassified Rhodospirillaceae 273307, Unclassified Rhodobacteraceae 273308, Unclassified OM60 273314, Unclassified Alteromonadaceae 273315, Unclassified HTCC2188 273316, Unclassified Oceanospirillaceae 273321, Unclassified Rhodobacteraceae 273324, Unclassified Rhodobacteraceae 273325, Unclassified Hyphomicrobiaceae 273326, Unclassified OM60 273329, Unclassified Bacteria 273330, Unclassified Bacteria 273331, Unclassified Rhodobacteraceae 273333, Unclassified Rhodobacteraceae 273334, Unclassified Rhodobacteraceae 273335, Unclassified Enterobacteriaceae 273337, Unclassified Enterobacteriaceae 273340


DNA analysis conducted by AquaBiomics LLC.

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Certificate of Analysis LRR G9.3

Certificate of Analysis: Live Reef Rubble, Batch LRR G9.3

lrr.g9.3_Certificate_of_Analysis

    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in and on a batch of Live Reef Rubble. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrr.g9.3
Batch Name G04-01-2025
Sample Date May 28, 2025 8:00 AM

Microbial Diversity

This sample contained DNA from 624 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Cenarchaeaceae
Type Percent of Community Genus Species
760 0.57 Nitrosopumilus Unknown
73 0.54 Nitrosopumilus Unknown
2996 0.24 Nitrosopumilus Unknown
640 0.20 Nitrosopumilus Unknown
25228 0.20 Nitrosopumilus Unknown
3535 0.06 Cenarchaeum symbiosum
14134 0.04 Nitrosopumilus Unknown
10731 0.03 Unknown Unknown
70968 0.03 Nitrosopumilus Unknown
14173 0.01 Nitrosopumilus Unknown
248127 0.01 Unknown Unknown
265528 0.01 Nitrosopumilus Unknown
265662 0.01 Nitrosopumilus Unknown

Nitrite-Oxidizing Bacteria

Nitrospiraceae
Type Percent of Community Genus Species
25186 0.01 Unknown Unknown
55498 0.01 Unknown Unknown
The nitrifying community in this sample included 15 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marcescens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 684 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Tharyx sp. (Annelida), Aphelochaeta marioni (Annelida), Ctenodrilus serratus (Annelida), Novafabricia sp. (Annelida), Protula sp. (Annelida), Fabomonas tropica (Apusomonadidae), Multimonas koreensis (Apusomonadidae), Saccharina japonica (Apusomonadidae), Glycera cf. (Arthropoda), Tetranychus urticae (Arthropoda), Coquimba ishizakii (Arthropoda), Humulus lupulus (Ascomycota), Aspergillus cristatus (Ascomycota), Aureobasidium pullulans (Ascomycota), Aspergillus penicillioides (Ascomycota), Mycosphaerella rosigena (Ascomycota), Cladosporium herbarum (Ascomycota), Peltaster fructicola (Ascomycota), Buellia georgei (Ascomycota), Postia placenta (Basidiomycota), Cystofilobasidium bisporidii (Basidiomycota), Malassezia restricta (Basidiomycota), Wallemia sebi (Basidiomycota), uncultured Auriculariaceae sq421714 (Basidiomycota), Cryptococcus sp. (Basidiomycota), Lentinula edodes (Basidiomycota), Cystofilobasidium infirmominiatum (Basidiomycota), Sporobolomyces roseus (Basidiomycota), Psathyrella candolleana (Basidiomycota), Marchandiobasidium aurantiacum (Basidiomycota), Cystofilobasidium capitatum (Basidiomycota), metagenome (Centrohelida), uncultured marine sq3673 (Centrohelida), uncultured marine sq15485 (Cercozoa), Paradinium poucheti (Cercozoa), Haplosporidian parasite (Cercozoa), Allas diplophysa (Cercozoa), Allantion sp. (Cercozoa), Allas sp. (Cercozoa), uncultured marine sq327460 (Cercozoa), Gromia oviformis (Cercozoa), Ventrifissura sp. (Cercozoa), uncultured eukaryote sq2529 (Cercozoa), Reckertia gemma (Cercozoa), uncultured Cercozoa sq327008 (Cercozoa), uncultured marine sq405854 (Cercozoa), uncultured marine sq417269 (Cercozoa), Nuclearia-like filose (Cercozoa), uncultured Thaumatomonadida sq425355 (Cercozoa), uncultured marine sq425358 (Cercozoa), uncultured marine sq425359 (Cercozoa), metagenome (Cercozoa), Cholamonas cyrtodiopsidis (Cercozoa), Hemigastrostyla enigmatica (Ciliophora), Diophrys parappendiculata (Ciliophora), Protocruzia adherens (Ciliophora), uncultured eukaryote sq1578 (Ciliophora), uncultured eukaryote sq2287 (Ciliophora), Loxophyllum perihoplophorum (Ciliophora), uncultured eukaryote sq138061 (Ciliophora), Pseudourostyla cristata (Ciliophora), Diophrys apoligothrix (Ciliophora), Uroleptus pisces (Ciliophora), uncultured eukaryote sq201 (Ciliophora), Protogastrostyla pulchra (Ciliophora), uncultured alveolate sq33232 (Ciliophora), uncultured alveolate sq60809 (Ciliophora), Miamiensis avidus (Ciliophora), uncultured alveolate sq416988 (Ciliophora), metagenome (Ciliophora), Hemigastrostyla sp. (Ciliophora), Craticula pseudocitrus (Diatomea), Navicula arenaria (Diatomea), uncultured marine sq6590 (Diatomea), uncultured eukaryote sq198850 (Diatomea), uncultured eukaryote sq152348 (Diatomea), Psammodictyon constrictum (Diatomea), uncultured stramenopile sq71371 (Diatomea), uncultured marine sq206365 (Diatomea), Bacillariophyta sp. (Diatomea), Rhaphoneis sp. (Diatomea), uncultured stramenopile sq402684 (Diatomea), Tryblionella apiculata (Diatomea), Nitzschia filiformis (Diatomea), uncultured marine sq171408 (Diatomea), uncultured eukaryote sq206394 (Diatomea), uncultured eukaryote sq267631 (Diatomea), uncultured eukaryote sq421717 (Diatomea), uncultured eukaryote sq6222 (Diatomea), uncultured eukaryote sq402670 (Diatomea), Protokeelia bassonii (Diatomea), Nitzschia cf. (Diatomea), uncultured marine sq404685 (Diatomea), uncultured marine sq141668 (Diatomea), uncultured marine sq305339 (Diatomea), uncultured eukaryote sq422367 (Diatomea), uncultured marine sq61198 (Diatomea), uncultured eukaryote sq268651 (Diatomea), uncultured stramenopile sq152522 (Diatomea), Pleurosigma sp. (Diatomea), uncultured eukaryote sq402714 (Diatomea), Haslea spicula (Diatomea), uncultured eukaryote sq52878 (Diatomea), uncultured marine sq60591 (Diatomea), uncultured marine sq186955 (Diatomea), uncultured eukaryote sq325512 (Diatomea), uncultured marine sq402712 (Diatomea), uncultured stramenopile sq402770 (Diatomea), Amphora cf. (Diatomea), uncultured marine sq152470 (Diatomea), Hippodonta capitata (Diatomea), uncultured eukaryote sq402881 (Diatomea), uncultured marine sq403095 (Diatomea), Cylindrotheca fusiformis (Diatomea), uncultured eukaryote sq423928 (Diatomea), uncultured marine sq423952 (Diatomea), uncultured eukaryote sq423953 (Diatomea), Navicula veneta (Diatomea), uncultured marine sq129510 (Diatomea), uncultured eukaryote sq141758 (Diatomea), Amphora coffeiformis (Diatomea), Tursiocola cf. (Diatomea), uncultured eukaryote sq345551 (Diatomea), Nitzschia sp. (Diatomea), uncultured eukaryote sq402676 (Diatomea), uncultured marine sq402720 (Diatomea), Amphora laevis (Diatomea), Navicula vara (Diatomea), uncultured marine sq403444 (Diatomea), uncultured eukaryote sq404676 (Diatomea), uncultured stramenopile sq404930 (Diatomea), uncultured marine sq407792 (Diatomea), uncultured marine sq407850 (Diatomea), Haslea ostrearia (Diatomea), Amphora sp. (Diatomea), uncultured marine sq407871 (Diatomea), Nitzschia longissima (Diatomea), uncultured marine sq416844 (Diatomea), uncultured marine sq416861 (Diatomea), uncultured marine sq417458 (Diatomea), uncultured eukaryote sq417472 (Diatomea), Navicula diserta (Diatomea), uncultured marine sq425308 (Diatomea), Heterocapsa triquetra (Dinoflagellata), uncultured eukaryote sq208881 (Dinoflagellata), uncultured eukaryote sq1314 (Dinoflagellata), uncultured eukaryote sq403126 (Dinoflagellata), uncultured eukaryote sq5615 (Dinoflagellata), Leiocephalium pseudosanguineum (Dinoflagellata), uncultured kinetoplastid sq403045 (Euglenozoa), uncultured eukaryote sq34327 (Euglenozoa), Notosolenus urceolatus (Euglenozoa), Diplonema sp. (Euglenozoa), uncultured marine sq1786 (Eukaryota), uncultured eukaryote sq1494 (Eukaryota), uncultured eukaryote sq32619 (Eukaryota), Paramoeba eilhardi (Eukaryota), Stygamoeba regulata (Eukaryota), Ciliophrys infusionum (Eukaryota), Lingulamoeba sp. (Eukaryota), uncultured eukaryote sq3043 (Eukaryota), Pirum gemmata (Eukaryota), Rhinomonas pauca (Eukaryota), Symbiochloris sp. (Eukaryota), uncultured eukaryote sq35940 (Eukaryota), Ulvella viridis (Eukaryota), Ancoracysta twista (Eukaryota), uncultured eukaryote sq403956 (Eukaryota), Paramoeba aestuarina (Eukaryota), uncultured eukaryote sq417176 (Eukaryota), uncultured marine sq425302 (Eukaryota), metagenome (Eukaryota), uncultured eukaryote sq425330 (Eukaryota), uncultured Corallinales sq21317 (Florideophycidae), uncultured Corallinales sq420883 (Florideophycidae), uncultured Corallinales sq32421 (Florideophycidae), uncultured Corallinales sq420913 (Florideophycidae), uncultured Corallinales sq420916 (Florideophycidae), uncultured Corallinales sq52775 (Florideophycidae), uncultured Corallinales sq420946 (Florideophycidae), Peyssonnelia novae-hollandiae (Florideophycidae), Melobesioideae sp. (Florideophycidae), uncultured Corallinales sq421060 (Florideophycidae), uncultured Corallinales sq32406 (Florideophycidae), uncultured Corallinales sq421096 (Florideophycidae), uncultured Corallinales sq421208 (Florideophycidae), uncultured Corallinales sq421266 (Florideophycidae), uncultured Corallinales sq421338 (Florideophycidae), Peyssonnelia capensis (Florideophycidae), Corallinales sp. (Florideophycidae), Peyssonnelia sp. (Florideophycidae), uncultured Corallinales sq421632 (Florideophycidae), uncultured Corallinales sq421633 (Florideophycidae), uncultured Corallinales sq421875 (Florideophycidae), uncultured Corallinales sq422157 (Florideophycidae), uncultured Corallinales sq326013 (Florideophycidae), uncultured Corallinales sq422541 (Florideophycidae), uncultured Corallinales sq422665 (Florideophycidae), uncultured Corallinales sq423050 (Florideophycidae), uncultured Corallinales sq44499 (Florideophycidae), Renouxia sp. (Florideophycidae), uncultured Corallinales sq423677 (Florideophycidae), uncultured Corallinales sq423678 (Florideophycidae), uncultured Corallinales sq152450 (Florideophycidae), uncultured Corallinales sq424527 (Florideophycidae), uncultured Corallinales sq425366 (Florideophycidae), uncultured Corallinales sq425367 (Florideophycidae), uncultured Corallinales sq425369 (Florideophycidae), uncultured Corallinales sq425370 (Florideophycidae), uncultured microeukaryote sq56470 (Kathablepharidae), Katablepharis remigera (Kathablepharidae), uncultured eukaryote sq67219 (Labyrinthulomycetes), uncultured eukaryote sq72 (Labyrinthulomycetes), uncultured eukaryote sq2132 (Labyrinthulomycetes), Schizochytrium minutum (Labyrinthulomycetes), Oblongichytrium sp. (Labyrinthulomycetes), uncultured eukaryote sq47361 (Labyrinthulomycetes), uncultured eukaryote sq116806 (Labyrinthulomycetes), uncultured eukaryote sq421158 (Labyrinthulomycetes), uncultured eukaryote sq222516 (Labyrinthulomycetes), Thraustochytrium multirudimentale (Labyrinthulomycetes), uncultured eukaryote sq421349 (Labyrinthulomycetes), uncultured stramenopile sq21358 (Labyrinthulomycetes), Thraustochytrium pachydermum (Labyrinthulomycetes), uncultured eukaryote sq259536 (Labyrinthulomycetes), uncultured marine sq265464 (Labyrinthulomycetes), Stellarchytrium dubum (Labyrinthulomycetes), uncultured eukaryote sq4861 (Labyrinthulomycetes), uncultured marine sq423391 (Labyrinthulomycetes), uncultured eukaryote sq423392 (Labyrinthulomycetes), uncultured eukaryote sq47616 (Labyrinthulomycetes), labyrinthulid quahog (Labyrinthulomycetes), uncultured eukaryote sq403047 (Labyrinthulomycetes), uncultured eukaryote sq418197 (Labyrinthulomycetes), uncultured eukaryote sq423939 (Labyrinthulomycetes), uncultured marine sq423942 (Labyrinthulomycetes), uncultured eukaryote sq423943 (Labyrinthulomycetes), uncultured eukaryote sq423944 (Labyrinthulomycetes), uncultured eukaryote sq423945 (Labyrinthulomycetes), uncultured eukaryote sq423946 (Labyrinthulomycetes), uncultured eukaryote sq423949 (Labyrinthulomycetes), uncultured eukaryote sq1117 (Labyrinthulomycetes), uncultured marine sq2482 (Labyrinthulomycetes), Aplanochytrium stocchinoi (Labyrinthulomycetes), uncultured eukaryote sq5115 (Labyrinthulomycetes), uncultured marine sq32611 (Labyrinthulomycetes), uncultured eukaryote sq144605 (Labyrinthulomycetes), uncultured eukaryote sq264771 (Labyrinthulomycetes), Thraustochytriidae sp. (Labyrinthulomycetes), uncultured eukaryote sq422784 (Labyrinthulomycetes), uncultured eukaryote sq425337 (Labyrinthulomycetes), uncultured eukaryote sq425346 (Labyrinthulomycetes), uncultured eukaryote sq425350 (Labyrinthulomycetes), uncultured eukaryote sq425351 (Labyrinthulomycetes), uncultured eukaryote sq2215 (MAST-3), uncultured eukaryote sq60608 (MAST-3), uncultured marine sq34824 (MAST-3), uncultured eukaryote sq1352 (MAST-3), uncultured eukaryote sq198916 (MAST-3), uncultured eukaryote sq423394 (MAST-3), uncultured eukaryote sq423933 (MAST-3), uncultured eukaryote sq423955 (MAST-3), Halodaphnea panulirata (Peronosporomycetes), Phytophthora nicotianae (Peronosporomycetes), uncultured stramenopile sq402693 (Peronosporomycetes), Hordeum vulgare (Phragmoplastophyta), Phaseoleae environmental (Phragmoplastophyta), Spirastrella sp. (Porifera), Aphroceras sp. (Porifera), hydrothermal vent (Retaria)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Unclassified Rhodobacteraceae 11254, Unclassified Rhodobacteraceae 102, Unclassified Rhodobacteraceae 1192, Unclassified Bacteria 270920, Unclassified Rhodobacteraceae 25798, Unclassified Rhodospirillaceae 225, Unclassified Bacteria 10206, Unclassified Hyphomicrobiaceae 3321, Unclassified Bacteria 25759, Unclassified Hyphomicrobiaceae 104, Unclassified Hyphomicrobiaceae 286, Unclassified Hyphomicrobiaceae 14109, Leucothrix sp., ZD0117 sp., Unclassified Bacteria 1250, Unclassified Hyphomicrobiaceae 10471, Unclassified Rhodobacteraceae 1176, Unclassified Rhodobacteraceae 54917, Nitrosopumilus sp., Salmonella enterica, Unclassified Bacteria 3161, nsmpVI18 sp., Achromobacter sp., Unclassified Coxiellaceae 13918, Unclassified Piscirickettsiaceae 545, Unclassified Rhodobacteraceae 12952, Thiothrix sp., Unclassified Bacteria 2104, Unclassified Flavobacteriaceae 2304, Unclassified Bacteria 9721, Pseudomonas sp., Paracoccus aminovorans, Unclassified Coxiellaceae 113277, Unclassified Hyphomicrobiaceae 1489, Unclassified Simkaniaceae 11483, Bdellovibrio sp., Unclassified Rhodobacteraceae 9650, Unclassified Bacteria 366, Unclassified Oceanospirillaceae 1193, Unclassified Kordiimonadaceae 352, Erythrobacter sp., Unclassified Hyphomonadaceae 10219, Unclassified Bacteria 265295, Unclassified Bacteria 359, Bacillus flexus, Unclassified Bacteria 37669, Rhodovulum sp., Unclassified Legionellaceae 792, Unclassified Bacteria 1755, Maricaulis sp., Vogesella sp., Candidatus sp., Unclassified Bacteria 26049, Unclassified Rhodobacteraceae 271204, Unclassified Bacteria 4968, Unclassified Bacteria 31914, Unclassified Bacteria 99471, Unclassified Piscirickettsiaceae 271221, Unclassified Rhodobacteraceae 271222, Ucs1325 sp., Mycobacterium sp., Unclassified Bacteria 12277, Unclassified Hyphomicrobiaceae 26095, Unclassified Hyphomicrobiaceae 106403, Unclassified Kordiimonadaceae 271018, Unclassified Bacteria 791, Unclassified Bacteria 10289, Unclassified Bacteria 46553, Microbulbifer sp., Unclassified Bacteria 271344, Unclassified Bacteria 9995, Unclassified Bacteria 16462, Anaerospora sp., Propionibacterium acnes, Unclassified Bacteria 62060, Unclassified Pirellulaceae 109572, Unclassified Rhodobacteraceae 238397, Unclassified Bacteria 1800, Unclassified Bacteria 27069, Unclassified Bacteria 74060, Unclassified Bacteria 81096, Unclassified Bacteria 99482, Unclassified Bacteria 253202, Unclassified Bacteria 265304, Unclassified Bacteria 949, Unclassified Hyphomonadaceae 1287, Unclassified Coxiellaceae 2257, Streptococcus infantis, Cenarchaeum symbiosum, Coraliomargarita sp., Luteolibacter sp., Unclassified Coxiellaceae 265326, Unclassified Bacteria 265331, Unclassified Bacteria 271556, Unclassified Bacteria 710, Unclassified Hyphomicrobiaceae 9813, Unclassified Pirellulaceae 31779, Unclassified Xenococcaceae 43854, Unclassified Bacteria 108068, Unclassified Legionellaceae 117826, Unclassified Bacteria 195182, Unclassified Coxiellaceae 265457, Unclassified Legionellaceae 271280, Unclassified Rhodobacteraceae 271861, Unclassified Rhodobacteraceae 41, Unclassified Hyphomicrobiaceae 273, Staphylococcus aureus, Nautella sp., Unclassified Bacteria 2338, Unclassified Simkaniaceae 2541, Unclassified Phyllobacteriaceae 2578, Photobacterium sp., Unclassified Alteromonadaceae 3157, Unclassified Cenarchaeaceae 10731, Unclassified Bacteria 43183, Unclassified Bacteria 68430, Unclassified Alteromonadaceae 74427, Unclassified Bacteria 81476, Unclassified Coxiellaceae 265305, Rickettsia sp., Unclassified Bacteria 265531, Unclassified Bacteria 266369, Unclassified Hyphomicrobiaceae 271471, Unclassified Rhodobacteraceae 271986, Unclassified Rhodobacteraceae 271988, Unclassified Hyphomicrobiaceae 272244, Unclassified Bacteria 272249, Unclassified Bacteria 272250, Unclassified Bacteria 272251, Unclassified Bacteria 272252, Unclassified Bacteria 272253, Pseudoalteromonas sp., Unclassified Bacteria 30, Unclassified Bacteria 378, Unclassified Rhodobacteraceae 1312, Unclassified Phyllobacteriaceae 1520, Unclassified Bacteria 2299, Unclassified Bacteria 3308, Unclassified Kordiimonadaceae 3562, Streptococcus sp., Unclassified Lentisphaeraceae 15113, Unclassified Lentisphaeraceae 16575, Bacillus sp., Unclassified Nitrospiraceae 25186, Unclassified Kordiimonadaceae 26209, Unclassified Bacteria 26591, Roseivirga sp., Unclassified Bacteria 36764, Hirschia baltica, Unclassified Rhodobacteraceae 52828, Curtobacterium sp., Unclassified Nitrospiraceae 55498, Unclassified Bacteria 56183, Unclassified Coxiellaceae 66758, Unclassified Bacteria 68755, Unclassified Bacteria 93586, Unclassified [Amoebophilaceae] 93818, Unclassified Bacteria 106956, Desulfococcus sp., Unclassified Coxiellaceae 115137, Unclassified Hyphomicrobiaceae 143275, Unclassified Micrococcaceae 154917, Unclassified Hyphomicrobiaceae 184924, Unclassified mitochondria 196497, Unclassified Hyphomicrobiaceae 207813, Unclassified Bacteria 212926, Unclassified Legionellaceae 220528, Plesiocystis sp., Unclassified Bacteria 220730, Unclassified Cellulomonadaceae 235373, Unclassified Cenarchaeaceae 248127, Unclassified Lentisphaeraceae 265415, Unclassified Bacteria 265506, Unclassified Bacteria 265533, Unclassified Legionellaceae 265612, Unclassified Saprospiraceae 265667, Unclassified Bacteria 265726, Unclassified Bacteria 265727, Unclassified Rickettsiaceae 265790, Unclassified Erythrobacteraceae 265879, Unclassified Coxiellaceae 265880, Unclassified Bacteria 266674, Alcanivorax sp., Unclassified Bacteria 267176, Unclassified Bacteria 267904, Kingella sp., Unclassified Hyphomicrobiaceae 271552, Unclassified Bacteria 271781, Unclassified Rhodospirillaceae 271838, Unclassified Hyphomicrobiaceae 271976, Unclassified Rhodobacteraceae 271987, Unclassified Bacteria 272108, Unclassified Bacteria 272110, Unclassified Rhodospirillaceae 272246, Unclassified Rhodobacteraceae 272555, Unclassified Piscirickettsiaceae 272558, Unclassified Bacteria 272562, Unclassified Rhodospirillaceae 273519, Unclassified Bacteria 273528, Unclassified Hyphomicrobiaceae 273529, Unclassified Hyphomicrobiaceae 273532, Unclassified Hyphomicrobiaceae 273533, Agrobacterium sp., Unclassified Hyphomicrobiaceae 273537, Unclassified Rhodobacteraceae 273540, Unclassified Rhodospirillaceae 273541, Unclassified Rhodobacteraceae 273545, Unclassified Rhodobacteraceae 273546, Unclassified Rhodospirillaceae 273548, Unclassified Bacteria 273549, Unclassified Hyphomicrobiaceae 273558, Unclassified Hyphomicrobiaceae 273560, Unclassified Hyphomicrobiaceae 273563, Unclassified Hyphomicrobiaceae 273564, Unclassified Rhodobacteraceae 273565, Unclassified Rhodobacteraceae 273566, Unclassified Hyphomicrobiaceae 273568, Unclassified Rhodospirillaceae 273569, Unclassified Rhodospirillaceae 273570, Unclassified Bacteria 273572, Unclassified Rhodobacteraceae 273573, Unclassified Rhodobacteraceae 273574, Unclassified Bacteria 273575, Unclassified Bacteria 273576, Unclassified Bacteria 273577, Unclassified Bacteria 273578, Unclassified Bacteria 273579, Unclassified Bacteria 273580, Unclassified Bacteria 273581, Unclassified Hyphomicrobiaceae 273588


DNA analysis conducted by AquaBiomics LLC.