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Certificate of Analysis LRR G9.2

Certificate of Analysis: Live Reef Rubble, Batch LRR G9.2

lrr.g9.2_Certificate_of_Analysis

    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in and on a batch of Live Reef Rubble. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrr.g9.2
Batch Name G04-01-2025
Sample Date May 28, 2025 8:00 AM

Microbial Diversity

This sample contained DNA from 763 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Cenarchaeaceae
Type Percent of Community Genus Species
73 0.82 Nitrosopumilus Unknown
2996 0.17 Nitrosopumilus Unknown
640 0.14 Nitrosopumilus Unknown
760 0.09 Nitrosopumilus Unknown
3535 0.04 Cenarchaeum symbiosum
14134 0.03 Nitrosopumilus Unknown
10731 0.02 Unknown Unknown
70968 0.02 Nitrosopumilus Unknown
14173 0.01 Nitrosopumilus Unknown
248127 0.01 Unknown Unknown
265528 0.01 Nitrosopumilus Unknown
265662 0.01 Nitrosopumilus Unknown

Nitrite-Oxidizing Bacteria

Nitrospiraceae
Type Percent of Community Genus Species
25186 0.01 Unknown Unknown
55498 0.01 Unknown Unknown
The nitrifying community in this sample included 14 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marcescens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 726 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Apomatus voightae (Annelida), Chitinopoma serrula (Annelida), Novafabricia sp. (Annelida), Protula sp. (Annelida), Humulus lupulus (Ascomycota), Pseudogymnoascus pannorum (Ascomycota), Blastomyces dermatitidis (Ascomycota), Clavispora lusitaniae (Ascomycota), Ophiosphaerella herpotricha (Ascomycota), Medeolaria farlowii (Ascomycota), Nanoscypha tetraspora (Ascomycota), Graminopassalora graminis (Ascomycota), Aspergillus penicillioides (Ascomycota), [Candida] ruelliae (Ascomycota), Neoascochyta exitialis (Ascomycota), Postia placenta (Basidiomycota), Malassezia restricta (Basidiomycota), Nidula niveotomentosa (Basidiomycota), Wallemia sebi (Basidiomycota), Amylostereum laevigatum (Basidiomycota), Psathyrella candolleana (Basidiomycota), Marchandiobasidium aurantiacum (Basidiomycota), Lepisosteus oculatus (Basidiomycota), Resinicium furfuraceum (Basidiomycota), metagenome (Centrohelida), uncultured marine sq3673 (Centrohelida), uncultured marine sq15485 (Cercozoa), Paradinium poucheti (Cercozoa), marine metagenome (Cercozoa), Gromia oviformis (Cercozoa), Phaseoleae environmental (Cercozoa), uncultured marine sq421865 (Cercozoa), Metopion fluens (Cercozoa), uncultured marine sq422202 (Cercozoa), Haplosporidian parasite (Cercozoa), Allantion sp. (Cercozoa), metagenome (Cercozoa), Ventrifissura sp. (Cercozoa), uncultured eukaryote sq2529 (Cercozoa), Reckertia gemma (Cercozoa), uncultured Cercozoa sq327008 (Cercozoa), uncultured marine sq405854 (Cercozoa), uncultured marine sq417269 (Cercozoa), Nuclearia-like filose (Cercozoa), uncultured marine sq425163 (Cercozoa), uncultured marine sq425175 (Cercozoa), uncultured marine sq425196 (Cercozoa), uncultured marine sq425203 (Cercozoa), Pseudoamphisiella quadrinucleata (Ciliophora), Cinetochilum ovale (Ciliophora), uncultured eukaryote sq2287 (Ciliophora), Diophrys parappendiculata (Ciliophora), Loxophyllum perihoplophorum (Ciliophora), Varistrombidium kielum (Ciliophora), Protocruzia adherens (Ciliophora), Diophrys apoligothrix (Ciliophora), Uroleptus pisces (Ciliophora), uncultured eukaryote sq201 (Ciliophora), Protogastrostyla pulchra (Ciliophora), uncultured alveolate sq33232 (Ciliophora), uncultured alveolate sq60809 (Ciliophora), Hemigastrostyla enigmatica (Ciliophora), Miamiensis avidus (Ciliophora), uncultured alveolate sq416988 (Ciliophora), uncultured eukaryote sq421956 (Cryptomycota), uncultured Chytridiomycota sq267780 (Cryptomycota), Arachis hypogaea (Cyanobacteria), Navicula arenaria (Diatomea), uncultured stramenopile sq152522 (Diatomea), Haslea ostrearia (Diatomea), Craticula pseudocitrus (Diatomea), Psammodictyon constrictum (Diatomea), uncultured eukaryote sq152348 (Diatomea), uncultured eukaryote sq198850 (Diatomea), Nitzschia sp. (Diatomea), Eunotia sp. (Diatomea), uncultured marine sq6590 (Diatomea), uncultured stramenopile sq71371 (Diatomea), uncultured marine sq267941 (Diatomea), Tryblionella apiculata (Diatomea), uncultured eukaryote sq267631 (Diatomea), uncultured stramenopile sq403231 (Diatomea), Thalassiosira hendeyi (Diatomea), Nitzschia cf. (Diatomea), uncultured marine sq421650 (Diatomea), uncultured marine sq421651 (Diatomea), uncultured eukaryote sq6222 (Diatomea), uncultured eukaryote sq402670 (Diatomea), Protokeelia bassonii (Diatomea), Nitzschia longissima (Diatomea), Stauroneis kriegeri (Diatomea), uncultured marine sq421859 (Diatomea), Bacillariophyta sp. (Diatomea), Navicula diserta (Diatomea), uncultured marine sq141668 (Diatomea), uncultured marine sq305339 (Diatomea), uncultured marine sq409036 (Diatomea), uncultured stramenopile sq422449 (Diatomea), uncultured eukaryote sq206394 (Diatomea), Pleurosigma sp. (Diatomea), uncultured eukaryote sq402714 (Diatomea), Haslea spicula (Diatomea), uncultured eukaryote sq52878 (Diatomea), uncultured marine sq60591 (Diatomea), uncultured marine sq186955 (Diatomea), uncultured eukaryote sq325512 (Diatomea), uncultured marine sq402712 (Diatomea), uncultured stramenopile sq402770 (Diatomea), Amphora cf. (Diatomea), uncultured stramenopile sq423209 (Diatomea), Bacillaria paxillifer (Diatomea), uncultured eukaryote sq423354 (Diatomea), uncultured marine sq45551 (Diatomea), uncultured marine sq152470 (Diatomea), uncultured marine sq305938 (Diatomea), Hippodonta capitata (Diatomea), uncultured eukaryote sq402881 (Diatomea), uncultured marine sq403095 (Diatomea), Cylindrotheca fusiformis (Diatomea), uncultured marine sq423614 (Diatomea), uncultured marine sq129510 (Diatomea), uncultured eukaryote sq268651 (Diatomea), Amphora coffeiformis (Diatomea), Tursiocola cf. (Diatomea), uncultured stramenopile sq345420 (Diatomea), uncultured eukaryote sq345551 (Diatomea), uncultured marine sq383879 (Diatomea), uncultured eukaryote sq402676 (Diatomea), uncultured marine sq402720 (Diatomea), Amphora laevis (Diatomea), Navicula vara (Diatomea), uncultured marine sq403444 (Diatomea), uncultured eukaryote sq404676 (Diatomea), Nitzschia filiformis (Diatomea), uncultured marine sq407792 (Diatomea), uncultured marine sq407850 (Diatomea), Amphora sp. (Diatomea), uncultured marine sq407871 (Diatomea), uncultured marine sq416844 (Diatomea), uncultured marine sq416861 (Diatomea), uncultured marine sq417458 (Diatomea), uncultured eukaryote sq417472 (Diatomea), uncultured marine sq424399 (Diatomea), uncultured marine sq425138 (Diatomea), uncultured marine sq425141 (Diatomea), uncultured marine sq425142 (Diatomea), uncultured marine sq425144 (Diatomea), uncultured eukaryote sq425147 (Diatomea), uncultured marine sq425198 (Diatomea), Craticula cuspidata (Diatomea), uncultured stramenopile sq425202 (Diatomea), uncultured eukaryote sq425205 (Diatomea), uncultured marine sq425210 (Diatomea), uncultured stramenopile sq425237 (Diatomea), uncultured eukaryote sq425244 (Diatomea), uncultured eukaryote sq421270 (Dinoflagellata), Symbiodinium sp. (Dinoflagellata), Heterocapsa triquetra (Dinoflagellata), uncultured eukaryote sq422742 (Dinoflagellata), uncultured eukaryote sq208881 (Dinoflagellata), uncultured eukaryote sq423011 (Dinoflagellata), uncultured eukaryote sq1314 (Dinoflagellata), uncultured eukaryote sq403126 (Dinoflagellata), uncultured eukaryote sq5615 (Dinoflagellata), Leiocephalium pseudosanguineum (Dinoflagellata), uncultured eukaryote sq425157 (Dinoflagellata), uncultured eukaryote sq425195 (Dinoflagellata), uncultured kinetoplastid sq403045 (Euglenozoa), uncultured eukaryote sq34327 (Euglenozoa), Notosolenus urceolatus (Euglenozoa), Diplonema sp. (Euglenozoa), uncultured eukaryote sq32619 (Eukaryota), Jakobida sp. (Eukaryota), Spumella-like (Eukaryota), Heribaudiella fluviatilis (Eukaryota), Ulvophyceae sp. (Eukaryota), Vannella sp. (Eukaryota), Pseudulvella consociata (Eukaryota), metagenome (Eukaryota), eukaryote clone (Eukaryota), uncultured eukaryote sq3043 (Eukaryota), Pirum gemmata (Eukaryota), Carinoma tremaphoros (Eukaryota), Rhinomonas pauca (Eukaryota), Symbiochloris sp. (Eukaryota), uncultured eukaryote sq35940 (Eukaryota), Ulvella viridis (Eukaryota), Ancoracysta twista (Eukaryota), uncultured eukaryote sq403956 (Eukaryota), Paramoeba aestuarina (Eukaryota), uncultured eukaryote sq417176 (Eukaryota), Epipyxis aureus (Eukaryota), Peyssonnelia novae-hollandiae (Florideophycidae), uncultured Corallinales sq32421 (Florideophycidae), Renouxia sp. (Florideophycidae), uncultured Corallinales sq152450 (Florideophycidae), Peyssonnelia capensis (Florideophycidae), uncultured Corallinales sq21317 (Florideophycidae), Peyssonnelia sp. (Florideophycidae), Melobesioideae sp. (Florideophycidae), uncultured Corallinales sq423904 (Florideophycidae), uncultured Corallinales sq32406 (Florideophycidae), uncultured Corallinales sq424414 (Florideophycidae), Pirsonia verrucosa (Incertae_Sedis), cf. Developayella (Incertae_Sedis), uncultured microeukaryote sq56470 (Kathablepharidae), Katablepharis remigera (Kathablepharidae), uncultured eukaryote sq72 (Labyrinthulomycetes), Oblongichytrium sp. (Labyrinthulomycetes), uncultured eukaryote sq47361 (Labyrinthulomycetes), uncultured eukaryote sq67219 (Labyrinthulomycetes), Stellarchytrium dubum (Labyrinthulomycetes), uncultured eukaryote sq222516 (Labyrinthulomycetes), Schizochytrium minutum (Labyrinthulomycetes), uncultured eukaryote sq2132 (Labyrinthulomycetes), Thraustochytriidae sp. (Labyrinthulomycetes), uncultured stramenopile sq21358 (Labyrinthulomycetes), uncultured marine sq421293 (Labyrinthulomycetes), unidentified (Labyrinthulomycetes), Thraustochytrium pachydermum (Labyrinthulomycetes), Thraustochytrium multirudimentale (Labyrinthulomycetes), uncultured eukaryote sq47616 (Labyrinthulomycetes), uncultured marine sq260178 (Labyrinthulomycetes), uncultured eukaryote sq423012 (Labyrinthulomycetes), uncultured eukaryote sq423214 (Labyrinthulomycetes), labyrinthulid quahog (Labyrinthulomycetes), uncultured eukaryote sq403047 (Labyrinthulomycetes), uncultured marine sq2482 (Labyrinthulomycetes), Aplanochytrium stocchinoi (Labyrinthulomycetes), uncultured marine sq79304 (Labyrinthulomycetes), uncultured eukaryote sq144605 (Labyrinthulomycetes), uncultured eukaryote sq425159 (Labyrinthulomycetes), Aplanochytrium blankum (Labyrinthulomycetes), uncultured eukaryote sq425181 (Labyrinthulomycetes), uncultured marine sq425184 (Labyrinthulomycetes), uncultured marine sq425190 (Labyrinthulomycetes), Mucor brunneogriseus (Mucoromycota), Phytophthora nicotianae (Peronosporomycetes), uncultured stramenopile sq402693 (Peronosporomycetes), Gilliesia graminea (Phragmoplastophyta), Erithalis fruticosa (Phragmoplastophyta), Humulus lupulus (Phragmoplastophyta), Ceratiola ericoides (Phragmoplastophyta), Erythranthe guttata (Phragmoplastophyta), Chaunochiton kappleri (Phragmoplastophyta), Citrus clementina (Phragmoplastophyta), Gossypium barbadense (Phragmoplastophyta), Ophiorrhiza pumila (Phragmoplastophyta), Takhtajania perrieri (Phragmoplastophyta), Cosmelia rubra (Phragmoplastophyta), Dulacia candida (Phragmoplastophyta), Malania oleifera (Phragmoplastophyta), Hordeum vulgare (Phragmoplastophyta), Gossypium hirsutum (Phragmoplastophyta), Plantago patagonica (Phragmoplastophyta), Lupinus angustifolius (Phragmoplastophyta), Mesorhizobium sp. (Phragmoplastophyta), Oenothera odorata (Phragmoplastophyta), Nothapodytes nimmoniana (Phragmoplastophyta), Cucumis sativus (Phragmoplastophyta), Trapa bispinosa (Phragmoplastophyta), Phaseoleae environmental (Phragmoplastophyta), Medicago truncatula (Phragmoplastophyta), Mida salicifolia (Phragmoplastophyta), Carya cathayensis (Phragmoplastophyta), Ipomoea nil (Phragmoplastophyta), Gratiola aurea (Phragmoplastophyta), Gossypium arboreum (Phragmoplastophyta), Phaseolus vulgaris (Phragmoplastophyta), Lolium perenne (Phragmoplastophyta), Ziziphus jujuba (Phragmoplastophyta), Datiscaceae environmental (Phragmoplastophyta), Salvadora angustifolia (Phragmoplastophyta), Corchorus olitorius (Phragmoplastophyta), Atalantia buxifolia (Phragmoplastophyta), Monarda fistulosa (Phragmoplastophyta), Callirhoe involucrata (Phragmoplastophyta), Gymnosiphon capitatus (Phragmoplastophyta), uncultured organism sq425228 (Phragmoplastophyta), Octomeles sumatrana (Phragmoplastophyta), hydrothermal vent (Retaria)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Unclassified Rhodobacteraceae 1072, Unclassified Oceanospirillaceae 721, Unclassified Rhodobacteraceae 85106, Unclassified Rhodobacteraceae 232, Unclassified Rhodobacteraceae 370, Unclassified Bacteria 10206, Unclassified Rhodobacteraceae 694, Alteromonas sp., Unclassified Oceanospirillaceae 81, Unclassified Rhodobacteraceae 427, Nitrosopumilus sp., Unclassified Rhodobacteraceae 451, Marivita sp., Unclassified Hyphomicrobiaceae 105, Unclassified Rhodobacteraceae 41, Unclassified Enterobacteriaceae 106767, Unclassified Rhodobacteraceae 1445, Sphingomonas sp., Marinicella sp., Unclassified Bacteria 1246, Unclassified Bacteria 93406, Unclassified Hyphomicrobiaceae 104, Unclassified Rhodobacteraceae 270944, Unclassified Hyphomicrobiaceae 3321, Unclassified Rhodobacteraceae 2230, HTCC sp., Unclassified Bacteria 5265, Pseudomonas sp., Unclassified Rhodobacteraceae 34, Unclassified Bacteria 8266, Unclassified Bacteria 11494, Unclassified Hyphomicrobiaceae 9709, Unclassified Rhodobacteraceae 9820, Unclassified Rhodobacteraceae 733, Unclassified JdFBGBact 2296, Unclassified Alteromonadaceae 88, Unclassified Rhodobacteraceae 270975, Unclassified Hyphomonadaceae 290, Unclassified Bacteria 1485, Planctomyces sp., Unclassified Bacteria 11007, Unclassified Pirellulaceae 270988, Unclassified Rhodobacteraceae 270994, Methylotenera mobilis, Unclassified Rhodospirillaceae 3251, Unclassified Bacteria 270996, Unclassified Hyphomonadaceae 1292, Unclassified Bacteria 12211, Unclassified Bacteria 33589, Unclassified Hyphomicrobiaceae 14109, Unclassified Rhodobacteraceae 251, Unclassified Rhodospirillaceae 2209, Unclassified Rhodobacteraceae 4291, Unclassified OM60 46521, Unclassified Hyphomicrobiaceae 4524, Unclassified Bacteria 9721, Rubritalea sp., Unclassified HTCC2188 50709, Unclassified Hyphomicrobiaceae 1489, Hyphomonas sp., Plesiocystis sp., Unclassified Bacteria 31778, Curtobacterium sp., Unclassified Bacteria 4430, Unclassified Alteromonadaceae 14898, Unclassified Bacteria 19579, Unclassified Rickettsiaceae 35566, Unclassified Phyllobacteriaceae 47571, Roseivivax sp., Unclassified Comamonadaceae 1574, Unclassified Hyphomonadaceae 1669, Ruegeria sp., Achromobacter sp., Unclassified Bacteria 5997, Unclassified Bacteria 10289, Unclassified Bacteria 180129, Unclassified Bacteria 265295, Unclassified Kordiimonadaceae 271018, Unclassified Alteromonadaceae 271099, Unclassified Phyllobacteriaceae 3695, Unclassified Bacteria 37669, Unclassified HTCC2188 271108, Unclassified Bacteria 359, Unclassified Bacteria 1605, Unclassified Rhodospirillaceae 10028, Unclassified Bacteria 10152, Vogesella sp., Unclassified Rhodobacteraceae 271126, Unclassified Bacteria 378, Unclassified Rhodospirillaceae 678, Unclassified Flammeovirgaceae 1479, Unclassified Bacteria 4258, Unclassified Sinobacteraceae 220323, Unclassified Oceanospirillaceae 271137, Unclassified Rhodobacteraceae 271150, Unclassified Bacteria 7192, Halomonas sp., Unclassified Phyllobacteriaceae 40380, Unclassified J115 271162, Unclassified Lentisphaeraceae 137, Unclassified Bacteria 26049, Unclassified Rhodobacteraceae 271060, Unclassified Oceanospirillaceae 271163, Unclassified Piscirickettsiaceae 3347, Unclassified SC3-41 10556, Unclassified Bacteria 99471, Unclassified Rhodobacteraceae 158348, Unclassified Hyphomicrobiaceae 271243, Mycobacterium sp., Unclassified Bacteria 77, Unclassified Bacteria 12277, Unclassified Oceanospirillaceae 181691, Unclassified Bacteria 271258, Pseudonocardia sp., Unclassified Bacteria 791, Unclassified Bacteria 43059, Unclassified Bacteria 46553, Microbulbifer sp., Unclassified Oceanospirillaceae 271303, Unclassified Rhodobacteraceae 271336, Unclassified Rhodobacteraceae 271337, Unclassified Rhodobacteraceae 271338, Unclassified Saprospiraceae 364, Unclassified Rhodospirillaceae 773, Unclassified Bacteria 16462, Unclassified Bacteria 62060, Unclassified Pirellulaceae 109572, Unclassified Oceanospirillaceae 169470, Unclassified Haliangiaceae 271403, Unclassified Bacteria 1800, Unclassified Bacteria 27069, Unclassified HTCC2188 56473, Unclassified Bacteria 74060, Unclassified Bacteria 81096, Unclassified Bacteria 99482, Unclassified Hyphomonadaceae 137750, Unclassified Bacteria 141105, Unclassified Bacteria 253202, Unclassified Bacteria 265304, Unclassified Oceanospirillaceae 271438, Unclassified Rhodobacteraceae 271489, Unclassified Enterobacteriaceae 271490, Unclassified Rhodobacteraceae 271492, Unclassified Alteromonadaceae 771, Unclassified Bacteria 949, Unclassified Coxiellaceae 2257, Streptococcus infantis, Cenarchaeum symbiosum, Unclassified Hyphomonadaceae 4559, Actinomyces sp., Coraliomargarita sp., Luteolibacter sp., Unclassified Rhodobacteraceae 241607, Unclassified Coxiellaceae 265326, Unclassified Bacteria 265331, Unclassified Oceanospirillaceae 271546, Unclassified Oceanospirillaceae 271547, Unclassified HTCC2089 271620, Unclassified Rhodobacteraceae 271621, Unclassified Rhodobacteraceae 271622, Unclassified Rhodobacteraceae 271623, Unclassified Rhodobacteraceae 271624, Unclassified Rhodobacteraceae 271625, Unclassified Rhodobacteraceae 271626, Unclassified Enterobacteriaceae 271627, Unclassified Bacteria 710, Unclassified Hyphomicrobiaceae 9813, Unclassified Pirellulaceae 31779, Unclassified Xenococcaceae 43854, Unclassified Bacteria 108068, Unclassified Legionellaceae 117826, Unclassified Oceanospirillaceae 163913, Unclassified Bacteria 195182, Unclassified Coxiellaceae 265457, Unclassified Oceanospirillaceae 271699, Unclassified Oceanospirillaceae 271700, Unclassified Oceanospirillaceae 271701, Unclassified Rhodobacteraceae 271826, Unclassified Hyphomonadaceae 271828, Unclassified Rhodobacteraceae 271829, Unclassified OM60 271830, Unclassified OM60 271831, Unclassified HTCC2188 271832, Unclassified Hyphomicrobiaceae 273, Unclassified J115 635, Staphylococcus aureus, Nautella sp., Ucs1325 sp., Unclassified Bacteria 2338, Unclassified Simkaniaceae 2541, Unclassified Phyllobacteriaceae 2578, Photobacterium sp., Unclassified Alteromonadaceae 3157, Unclassified Cenarchaeaceae 10731, Unclassified Bacteria 43183, Unclassified Bacteria 68430, Unclassified Alteromonadaceae 74427, Unclassified Bacteria 81476, Unclassified Rhodobacteraceae 131542, Unclassified Rhodobacteraceae 131553, Unclassified Hyphomicrobiaceae 142641, Unclassified Hyphomicrobiaceae 143275, Unclassified Piscirickettsiaceae 150286, Unclassified Coxiellaceae 265305, Rickettsia sp., Unclassified Bacteria 265531, Unclassified Hyphomonadaceae 266256, Unclassified Bacteria 266369, Unclassified Hyphomicrobiaceae 271307, Unclassified Hyphomicrobiaceae 271949, Unclassified Phyllobacteriaceae 271951, Unclassified Piscirickettsiaceae 271952, Unclassified Oceanospirillaceae 271953, Unclassified Rhodobacteraceae 271954, Unclassified Oceanospirillaceae 271955, Unclassified Rhodobacteraceae 271956, Unclassified HTCC2188 271957, Unclassified Bacteria 271958, Unclassified Oceanospirillaceae 271959, Unclassified Hyphomonadaceae 272183, Unclassified Bacteria 272184, Unclassified Bacteria 272187, Unclassified Rhodobacteraceae 272189, Unclassified Rhodobacteraceae 272192, Unclassified Enterobacteriaceae 272193, Pseudoalteromonas sp., Unclassified Bacteria 30, Unclassified Oceanospirillaceae 524, Maricaulis sp., Candidatus sp., Unclassified Rhodobacteraceae 1312, Unclassified Phyllobacteriaceae 1520, Unclassified Bacteria 2299, Unclassified Bacteria 3308, Unclassified Kordiimonadaceae 3562, Streptococcus sp., Unclassified Lentisphaeraceae 15113, Unclassified Lentisphaeraceae 16575, Bacillus sp., Unclassified Nitrospiraceae 25186, Unclassified Kordiimonadaceae 26209, Unclassified Bacteria 26591, Roseivirga sp., Unclassified Bacteria 36764, Hirschia baltica, Unclassified Rhodobacteraceae 52828, Unclassified Nitrospiraceae 55498, Unclassified Bacteria 56183, Unclassified Coxiellaceae 66758, Unclassified Bacteria 68755, Unclassified Bacteria 93586, Unclassified [Amoebophilaceae] 93818, Unclassified Hyphomicrobiaceae 106403, Unclassified Bacteria 106956, Desulfococcus sp., Unclassified Coxiellaceae 115137, Unclassified Hyphomonadaceae 144443, Unclassified Hyphomicrobiaceae 150024, Unclassified Oceanospirillaceae 151333, Unclassified Micrococcaceae 154917, Unclassified Hyphomicrobiaceae 167557, Unclassified mitochondria 196497, Unclassified Phyllobacteriaceae 200008, Unclassified Bacteria 212926, Unclassified J115 213552, Unclassified J115 218430, Unclassified Legionellaceae 220528, Unclassified Bacteria 220730, Unclassified Cenarchaeaceae 248127, Unclassified Lentisphaeraceae 265415, Unclassified Bacteria 265506, Unclassified Bacteria 265533, Unclassified Legionellaceae 265612, Unclassified Saprospiraceae 265667, Unclassified Bacteria 265726, Unclassified Bacteria 265727, Unclassified Rickettsiaceae 265790, Unclassified Erythrobacteraceae 265879, Unclassified Coxiellaceae 265880, Unclassified Bacteria 266674, Alcanivorax sp., Unclassified Bacteria 267176, Unclassified Bacteria 267904, Kingella sp., Unclassified Oceanospirillaceae 271114, Unclassified Oceanospirillaceae 272453, Unclassified Rhodospirillaceae 272454, Unclassified Hyphomonadaceae 272456, Unclassified Piscirickettsiaceae 272457, Unclassified Phyllobacteriaceae 272459, Unclassified Bacteria 272460, Unclassified Bacteria 272461, Unclassified Bacteria 272462, Unclassified Oceanospirillaceae 272464, Unclassified Hyphomonadaceae 272466, Unclassified Hyphomonadaceae 272467, Unclassified Rhodobacteraceae 272469, Unclassified Rhodobacteraceae 272470, Unclassified Rhodobacteraceae 272471, Unclassified Rhodobacteraceae 272472, Unclassified Bacteria 272475, Unclassified Bacteria 272476, Unclassified Bacteria 272477, Unclassified Rhodobacteraceae 272478, Unclassified Phyllobacteriaceae 272479, Unclassified Rhodobacteraceae 273258, Unclassified Rhodobacteraceae 273259, Unclassified Rhodobacteraceae 273260, Unclassified Rhodospirillaceae 273263, Unclassified Phyllobacteriaceae 273268, Unclassified Hyphomicrobiaceae 273269, Unclassified Hyphomicrobiaceae 273270, Unclassified Hyphomicrobiaceae 273271, Unclassified Hyphomonadaceae 273272, Unclassified Bacteria 273274, Unclassified Alteromonadaceae 273275, Unclassified Hyphomicrobiaceae 273276, Unclassified Hyphomicrobiaceae 273277, Unclassified Rhodobacteraceae 273278, Unclassified Rhodospirillaceae 273279, Unclassified Rhodospirillaceae 273280, Unclassified Rhodospirillaceae 273281, Unclassified Rhodospirillaceae 273282, Unclassified Rhodospirillaceae 273284, Unclassified OM60 273292, Unclassified Rhodobacteraceae 273295, Unclassified Rhodobacteraceae 273296, Unclassified Rhodobacteraceae 273297, Unclassified Rhodobacteraceae 273300, Unclassified Rhodobacteraceae 273301, Unclassified Rhodobacteraceae 273302, Unclassified Rhodobacteraceae 273303, Unclassified Rhodobacteraceae 273304, Unclassified Rhodobacteraceae 273305, Unclassified Rhodobacteraceae 273306, Unclassified Rhodospirillaceae 273307, Unclassified Rhodobacteraceae 273308, Unclassified OM60 273314, Unclassified Alteromonadaceae 273315, Unclassified HTCC2188 273316, Unclassified Oceanospirillaceae 273321, Unclassified Rhodobacteraceae 273324, Unclassified Rhodobacteraceae 273325, Unclassified Hyphomicrobiaceae 273326, Unclassified OM60 273329, Unclassified Bacteria 273330, Unclassified Bacteria 273331, Unclassified Rhodobacteraceae 273333, Unclassified Rhodobacteraceae 273334, Unclassified Rhodobacteraceae 273335, Unclassified Enterobacteriaceae 273337, Unclassified Enterobacteriaceae 273340


DNA analysis conducted by AquaBiomics LLC.

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Certificate of Analysis LRR G9.3

Certificate of Analysis: Live Reef Rubble, Batch LRR G9.3

lrr.g9.3_Certificate_of_Analysis

    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in and on a batch of Live Reef Rubble. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrr.g9.3
Batch Name G04-01-2025
Sample Date May 28, 2025 8:00 AM

Microbial Diversity

This sample contained DNA from 624 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Cenarchaeaceae
Type Percent of Community Genus Species
760 0.57 Nitrosopumilus Unknown
73 0.54 Nitrosopumilus Unknown
2996 0.24 Nitrosopumilus Unknown
640 0.20 Nitrosopumilus Unknown
25228 0.20 Nitrosopumilus Unknown
3535 0.06 Cenarchaeum symbiosum
14134 0.04 Nitrosopumilus Unknown
10731 0.03 Unknown Unknown
70968 0.03 Nitrosopumilus Unknown
14173 0.01 Nitrosopumilus Unknown
248127 0.01 Unknown Unknown
265528 0.01 Nitrosopumilus Unknown
265662 0.01 Nitrosopumilus Unknown

Nitrite-Oxidizing Bacteria

Nitrospiraceae
Type Percent of Community Genus Species
25186 0.01 Unknown Unknown
55498 0.01 Unknown Unknown
The nitrifying community in this sample included 15 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marcescens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 684 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families containing 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Tharyx sp. (Annelida), Aphelochaeta marioni (Annelida), Ctenodrilus serratus (Annelida), Novafabricia sp. (Annelida), Protula sp. (Annelida), Fabomonas tropica (Apusomonadidae), Multimonas koreensis (Apusomonadidae), Saccharina japonica (Apusomonadidae), Glycera cf. (Arthropoda), Tetranychus urticae (Arthropoda), Coquimba ishizakii (Arthropoda), Humulus lupulus (Ascomycota), Aspergillus cristatus (Ascomycota), Aureobasidium pullulans (Ascomycota), Aspergillus penicillioides (Ascomycota), Mycosphaerella rosigena (Ascomycota), Cladosporium herbarum (Ascomycota), Peltaster fructicola (Ascomycota), Buellia georgei (Ascomycota), Postia placenta (Basidiomycota), Cystofilobasidium bisporidii (Basidiomycota), Malassezia restricta (Basidiomycota), Wallemia sebi (Basidiomycota), uncultured Auriculariaceae sq421714 (Basidiomycota), Cryptococcus sp. (Basidiomycota), Lentinula edodes (Basidiomycota), Cystofilobasidium infirmominiatum (Basidiomycota), Sporobolomyces roseus (Basidiomycota), Psathyrella candolleana (Basidiomycota), Marchandiobasidium aurantiacum (Basidiomycota), Cystofilobasidium capitatum (Basidiomycota), metagenome (Centrohelida), uncultured marine sq3673 (Centrohelida), uncultured marine sq15485 (Cercozoa), Paradinium poucheti (Cercozoa), Haplosporidian parasite (Cercozoa), Allas diplophysa (Cercozoa), Allantion sp. (Cercozoa), Allas sp. (Cercozoa), uncultured marine sq327460 (Cercozoa), Gromia oviformis (Cercozoa), Ventrifissura sp. (Cercozoa), uncultured eukaryote sq2529 (Cercozoa), Reckertia gemma (Cercozoa), uncultured Cercozoa sq327008 (Cercozoa), uncultured marine sq405854 (Cercozoa), uncultured marine sq417269 (Cercozoa), Nuclearia-like filose (Cercozoa), uncultured Thaumatomonadida sq425355 (Cercozoa), uncultured marine sq425358 (Cercozoa), uncultured marine sq425359 (Cercozoa), metagenome (Cercozoa), Cholamonas cyrtodiopsidis (Cercozoa), Hemigastrostyla enigmatica (Ciliophora), Diophrys parappendiculata (Ciliophora), Protocruzia adherens (Ciliophora), uncultured eukaryote sq1578 (Ciliophora), uncultured eukaryote sq2287 (Ciliophora), Loxophyllum perihoplophorum (Ciliophora), uncultured eukaryote sq138061 (Ciliophora), Pseudourostyla cristata (Ciliophora), Diophrys apoligothrix (Ciliophora), Uroleptus pisces (Ciliophora), uncultured eukaryote sq201 (Ciliophora), Protogastrostyla pulchra (Ciliophora), uncultured alveolate sq33232 (Ciliophora), uncultured alveolate sq60809 (Ciliophora), Miamiensis avidus (Ciliophora), uncultured alveolate sq416988 (Ciliophora), metagenome (Ciliophora), Hemigastrostyla sp. (Ciliophora), Craticula pseudocitrus (Diatomea), Navicula arenaria (Diatomea), uncultured marine sq6590 (Diatomea), uncultured eukaryote sq198850 (Diatomea), uncultured eukaryote sq152348 (Diatomea), Psammodictyon constrictum (Diatomea), uncultured stramenopile sq71371 (Diatomea), uncultured marine sq206365 (Diatomea), Bacillariophyta sp. (Diatomea), Rhaphoneis sp. (Diatomea), uncultured stramenopile sq402684 (Diatomea), Tryblionella apiculata (Diatomea), Nitzschia filiformis (Diatomea), uncultured marine sq171408 (Diatomea), uncultured eukaryote sq206394 (Diatomea), uncultured eukaryote sq267631 (Diatomea), uncultured eukaryote sq421717 (Diatomea), uncultured eukaryote sq6222 (Diatomea), uncultured eukaryote sq402670 (Diatomea), Protokeelia bassonii (Diatomea), Nitzschia cf. (Diatomea), uncultured marine sq404685 (Diatomea), uncultured marine sq141668 (Diatomea), uncultured marine sq305339 (Diatomea), uncultured eukaryote sq422367 (Diatomea), uncultured marine sq61198 (Diatomea), uncultured eukaryote sq268651 (Diatomea), uncultured stramenopile sq152522 (Diatomea), Pleurosigma sp. (Diatomea), uncultured eukaryote sq402714 (Diatomea), Haslea spicula (Diatomea), uncultured eukaryote sq52878 (Diatomea), uncultured marine sq60591 (Diatomea), uncultured marine sq186955 (Diatomea), uncultured eukaryote sq325512 (Diatomea), uncultured marine sq402712 (Diatomea), uncultured stramenopile sq402770 (Diatomea), Amphora cf. (Diatomea), uncultured marine sq152470 (Diatomea), Hippodonta capitata (Diatomea), uncultured eukaryote sq402881 (Diatomea), uncultured marine sq403095 (Diatomea), Cylindrotheca fusiformis (Diatomea), uncultured eukaryote sq423928 (Diatomea), uncultured marine sq423952 (Diatomea), uncultured eukaryote sq423953 (Diatomea), Navicula veneta (Diatomea), uncultured marine sq129510 (Diatomea), uncultured eukaryote sq141758 (Diatomea), Amphora coffeiformis (Diatomea), Tursiocola cf. (Diatomea), uncultured eukaryote sq345551 (Diatomea), Nitzschia sp. (Diatomea), uncultured eukaryote sq402676 (Diatomea), uncultured marine sq402720 (Diatomea), Amphora laevis (Diatomea), Navicula vara (Diatomea), uncultured marine sq403444 (Diatomea), uncultured eukaryote sq404676 (Diatomea), uncultured stramenopile sq404930 (Diatomea), uncultured marine sq407792 (Diatomea), uncultured marine sq407850 (Diatomea), Haslea ostrearia (Diatomea), Amphora sp. (Diatomea), uncultured marine sq407871 (Diatomea), Nitzschia longissima (Diatomea), uncultured marine sq416844 (Diatomea), uncultured marine sq416861 (Diatomea), uncultured marine sq417458 (Diatomea), uncultured eukaryote sq417472 (Diatomea), Navicula diserta (Diatomea), uncultured marine sq425308 (Diatomea), Heterocapsa triquetra (Dinoflagellata), uncultured eukaryote sq208881 (Dinoflagellata), uncultured eukaryote sq1314 (Dinoflagellata), uncultured eukaryote sq403126 (Dinoflagellata), uncultured eukaryote sq5615 (Dinoflagellata), Leiocephalium pseudosanguineum (Dinoflagellata), uncultured kinetoplastid sq403045 (Euglenozoa), uncultured eukaryote sq34327 (Euglenozoa), Notosolenus urceolatus (Euglenozoa), Diplonema sp. (Euglenozoa), uncultured marine sq1786 (Eukaryota), uncultured eukaryote sq1494 (Eukaryota), uncultured eukaryote sq32619 (Eukaryota), Paramoeba eilhardi (Eukaryota), Stygamoeba regulata (Eukaryota), Ciliophrys infusionum (Eukaryota), Lingulamoeba sp. (Eukaryota), uncultured eukaryote sq3043 (Eukaryota), Pirum gemmata (Eukaryota), Rhinomonas pauca (Eukaryota), Symbiochloris sp. (Eukaryota), uncultured eukaryote sq35940 (Eukaryota), Ulvella viridis (Eukaryota), Ancoracysta twista (Eukaryota), uncultured eukaryote sq403956 (Eukaryota), Paramoeba aestuarina (Eukaryota), uncultured eukaryote sq417176 (Eukaryota), uncultured marine sq425302 (Eukaryota), metagenome (Eukaryota), uncultured eukaryote sq425330 (Eukaryota), uncultured Corallinales sq21317 (Florideophycidae), uncultured Corallinales sq420883 (Florideophycidae), uncultured Corallinales sq32421 (Florideophycidae), uncultured Corallinales sq420913 (Florideophycidae), uncultured Corallinales sq420916 (Florideophycidae), uncultured Corallinales sq52775 (Florideophycidae), uncultured Corallinales sq420946 (Florideophycidae), Peyssonnelia novae-hollandiae (Florideophycidae), Melobesioideae sp. (Florideophycidae), uncultured Corallinales sq421060 (Florideophycidae), uncultured Corallinales sq32406 (Florideophycidae), uncultured Corallinales sq421096 (Florideophycidae), uncultured Corallinales sq421208 (Florideophycidae), uncultured Corallinales sq421266 (Florideophycidae), uncultured Corallinales sq421338 (Florideophycidae), Peyssonnelia capensis (Florideophycidae), Corallinales sp. (Florideophycidae), Peyssonnelia sp. (Florideophycidae), uncultured Corallinales sq421632 (Florideophycidae), uncultured Corallinales sq421633 (Florideophycidae), uncultured Corallinales sq421875 (Florideophycidae), uncultured Corallinales sq422157 (Florideophycidae), uncultured Corallinales sq326013 (Florideophycidae), uncultured Corallinales sq422541 (Florideophycidae), uncultured Corallinales sq422665 (Florideophycidae), uncultured Corallinales sq423050 (Florideophycidae), uncultured Corallinales sq44499 (Florideophycidae), Renouxia sp. (Florideophycidae), uncultured Corallinales sq423677 (Florideophycidae), uncultured Corallinales sq423678 (Florideophycidae), uncultured Corallinales sq152450 (Florideophycidae), uncultured Corallinales sq424527 (Florideophycidae), uncultured Corallinales sq425366 (Florideophycidae), uncultured Corallinales sq425367 (Florideophycidae), uncultured Corallinales sq425369 (Florideophycidae), uncultured Corallinales sq425370 (Florideophycidae), uncultured microeukaryote sq56470 (Kathablepharidae), Katablepharis remigera (Kathablepharidae), uncultured eukaryote sq67219 (Labyrinthulomycetes), uncultured eukaryote sq72 (Labyrinthulomycetes), uncultured eukaryote sq2132 (Labyrinthulomycetes), Schizochytrium minutum (Labyrinthulomycetes), Oblongichytrium sp. (Labyrinthulomycetes), uncultured eukaryote sq47361 (Labyrinthulomycetes), uncultured eukaryote sq116806 (Labyrinthulomycetes), uncultured eukaryote sq421158 (Labyrinthulomycetes), uncultured eukaryote sq222516 (Labyrinthulomycetes), Thraustochytrium multirudimentale (Labyrinthulomycetes), uncultured eukaryote sq421349 (Labyrinthulomycetes), uncultured stramenopile sq21358 (Labyrinthulomycetes), Thraustochytrium pachydermum (Labyrinthulomycetes), uncultured eukaryote sq259536 (Labyrinthulomycetes), uncultured marine sq265464 (Labyrinthulomycetes), Stellarchytrium dubum (Labyrinthulomycetes), uncultured eukaryote sq4861 (Labyrinthulomycetes), uncultured marine sq423391 (Labyrinthulomycetes), uncultured eukaryote sq423392 (Labyrinthulomycetes), uncultured eukaryote sq47616 (Labyrinthulomycetes), labyrinthulid quahog (Labyrinthulomycetes), uncultured eukaryote sq403047 (Labyrinthulomycetes), uncultured eukaryote sq418197 (Labyrinthulomycetes), uncultured eukaryote sq423939 (Labyrinthulomycetes), uncultured marine sq423942 (Labyrinthulomycetes), uncultured eukaryote sq423943 (Labyrinthulomycetes), uncultured eukaryote sq423944 (Labyrinthulomycetes), uncultured eukaryote sq423945 (Labyrinthulomycetes), uncultured eukaryote sq423946 (Labyrinthulomycetes), uncultured eukaryote sq423949 (Labyrinthulomycetes), uncultured eukaryote sq1117 (Labyrinthulomycetes), uncultured marine sq2482 (Labyrinthulomycetes), Aplanochytrium stocchinoi (Labyrinthulomycetes), uncultured eukaryote sq5115 (Labyrinthulomycetes), uncultured marine sq32611 (Labyrinthulomycetes), uncultured eukaryote sq144605 (Labyrinthulomycetes), uncultured eukaryote sq264771 (Labyrinthulomycetes), Thraustochytriidae sp. (Labyrinthulomycetes), uncultured eukaryote sq422784 (Labyrinthulomycetes), uncultured eukaryote sq425337 (Labyrinthulomycetes), uncultured eukaryote sq425346 (Labyrinthulomycetes), uncultured eukaryote sq425350 (Labyrinthulomycetes), uncultured eukaryote sq425351 (Labyrinthulomycetes), uncultured eukaryote sq2215 (MAST-3), uncultured eukaryote sq60608 (MAST-3), uncultured marine sq34824 (MAST-3), uncultured eukaryote sq1352 (MAST-3), uncultured eukaryote sq198916 (MAST-3), uncultured eukaryote sq423394 (MAST-3), uncultured eukaryote sq423933 (MAST-3), uncultured eukaryote sq423955 (MAST-3), Halodaphnea panulirata (Peronosporomycetes), Phytophthora nicotianae (Peronosporomycetes), uncultured stramenopile sq402693 (Peronosporomycetes), Hordeum vulgare (Phragmoplastophyta), Phaseoleae environmental (Phragmoplastophyta), Spirastrella sp. (Porifera), Aphroceras sp. (Porifera), hydrothermal vent (Retaria)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Unclassified Rhodobacteraceae 11254, Unclassified Rhodobacteraceae 102, Unclassified Rhodobacteraceae 1192, Unclassified Bacteria 270920, Unclassified Rhodobacteraceae 25798, Unclassified Rhodospirillaceae 225, Unclassified Bacteria 10206, Unclassified Hyphomicrobiaceae 3321, Unclassified Bacteria 25759, Unclassified Hyphomicrobiaceae 104, Unclassified Hyphomicrobiaceae 286, Unclassified Hyphomicrobiaceae 14109, Leucothrix sp., ZD0117 sp., Unclassified Bacteria 1250, Unclassified Hyphomicrobiaceae 10471, Unclassified Rhodobacteraceae 1176, Unclassified Rhodobacteraceae 54917, Nitrosopumilus sp., Salmonella enterica, Unclassified Bacteria 3161, nsmpVI18 sp., Achromobacter sp., Unclassified Coxiellaceae 13918, Unclassified Piscirickettsiaceae 545, Unclassified Rhodobacteraceae 12952, Thiothrix sp., Unclassified Bacteria 2104, Unclassified Flavobacteriaceae 2304, Unclassified Bacteria 9721, Pseudomonas sp., Paracoccus aminovorans, Unclassified Coxiellaceae 113277, Unclassified Hyphomicrobiaceae 1489, Unclassified Simkaniaceae 11483, Bdellovibrio sp., Unclassified Rhodobacteraceae 9650, Unclassified Bacteria 366, Unclassified Oceanospirillaceae 1193, Unclassified Kordiimonadaceae 352, Erythrobacter sp., Unclassified Hyphomonadaceae 10219, Unclassified Bacteria 265295, Unclassified Bacteria 359, Bacillus flexus, Unclassified Bacteria 37669, Rhodovulum sp., Unclassified Legionellaceae 792, Unclassified Bacteria 1755, Maricaulis sp., Vogesella sp., Candidatus sp., Unclassified Bacteria 26049, Unclassified Rhodobacteraceae 271204, Unclassified Bacteria 4968, Unclassified Bacteria 31914, Unclassified Bacteria 99471, Unclassified Piscirickettsiaceae 271221, Unclassified Rhodobacteraceae 271222, Ucs1325 sp., Mycobacterium sp., Unclassified Bacteria 12277, Unclassified Hyphomicrobiaceae 26095, Unclassified Hyphomicrobiaceae 106403, Unclassified Kordiimonadaceae 271018, Unclassified Bacteria 791, Unclassified Bacteria 10289, Unclassified Bacteria 46553, Microbulbifer sp., Unclassified Bacteria 271344, Unclassified Bacteria 9995, Unclassified Bacteria 16462, Anaerospora sp., Propionibacterium acnes, Unclassified Bacteria 62060, Unclassified Pirellulaceae 109572, Unclassified Rhodobacteraceae 238397, Unclassified Bacteria 1800, Unclassified Bacteria 27069, Unclassified Bacteria 74060, Unclassified Bacteria 81096, Unclassified Bacteria 99482, Unclassified Bacteria 253202, Unclassified Bacteria 265304, Unclassified Bacteria 949, Unclassified Hyphomonadaceae 1287, Unclassified Coxiellaceae 2257, Streptococcus infantis, Cenarchaeum symbiosum, Coraliomargarita sp., Luteolibacter sp., Unclassified Coxiellaceae 265326, Unclassified Bacteria 265331, Unclassified Bacteria 271556, Unclassified Bacteria 710, Unclassified Hyphomicrobiaceae 9813, Unclassified Pirellulaceae 31779, Unclassified Xenococcaceae 43854, Unclassified Bacteria 108068, Unclassified Legionellaceae 117826, Unclassified Bacteria 195182, Unclassified Coxiellaceae 265457, Unclassified Legionellaceae 271280, Unclassified Rhodobacteraceae 271861, Unclassified Rhodobacteraceae 41, Unclassified Hyphomicrobiaceae 273, Staphylococcus aureus, Nautella sp., Unclassified Bacteria 2338, Unclassified Simkaniaceae 2541, Unclassified Phyllobacteriaceae 2578, Photobacterium sp., Unclassified Alteromonadaceae 3157, Unclassified Cenarchaeaceae 10731, Unclassified Bacteria 43183, Unclassified Bacteria 68430, Unclassified Alteromonadaceae 74427, Unclassified Bacteria 81476, Unclassified Coxiellaceae 265305, Rickettsia sp., Unclassified Bacteria 265531, Unclassified Bacteria 266369, Unclassified Hyphomicrobiaceae 271471, Unclassified Rhodobacteraceae 271986, Unclassified Rhodobacteraceae 271988, Unclassified Hyphomicrobiaceae 272244, Unclassified Bacteria 272249, Unclassified Bacteria 272250, Unclassified Bacteria 272251, Unclassified Bacteria 272252, Unclassified Bacteria 272253, Pseudoalteromonas sp., Unclassified Bacteria 30, Unclassified Bacteria 378, Unclassified Rhodobacteraceae 1312, Unclassified Phyllobacteriaceae 1520, Unclassified Bacteria 2299, Unclassified Bacteria 3308, Unclassified Kordiimonadaceae 3562, Streptococcus sp., Unclassified Lentisphaeraceae 15113, Unclassified Lentisphaeraceae 16575, Bacillus sp., Unclassified Nitrospiraceae 25186, Unclassified Kordiimonadaceae 26209, Unclassified Bacteria 26591, Roseivirga sp., Unclassified Bacteria 36764, Hirschia baltica, Unclassified Rhodobacteraceae 52828, Curtobacterium sp., Unclassified Nitrospiraceae 55498, Unclassified Bacteria 56183, Unclassified Coxiellaceae 66758, Unclassified Bacteria 68755, Unclassified Bacteria 93586, Unclassified [Amoebophilaceae] 93818, Unclassified Bacteria 106956, Desulfococcus sp., Unclassified Coxiellaceae 115137, Unclassified Hyphomicrobiaceae 143275, Unclassified Micrococcaceae 154917, Unclassified Hyphomicrobiaceae 184924, Unclassified mitochondria 196497, Unclassified Hyphomicrobiaceae 207813, Unclassified Bacteria 212926, Unclassified Legionellaceae 220528, Plesiocystis sp., Unclassified Bacteria 220730, Unclassified Cellulomonadaceae 235373, Unclassified Cenarchaeaceae 248127, Unclassified Lentisphaeraceae 265415, Unclassified Bacteria 265506, Unclassified Bacteria 265533, Unclassified Legionellaceae 265612, Unclassified Saprospiraceae 265667, Unclassified Bacteria 265726, Unclassified Bacteria 265727, Unclassified Rickettsiaceae 265790, Unclassified Erythrobacteraceae 265879, Unclassified Coxiellaceae 265880, Unclassified Bacteria 266674, Alcanivorax sp., Unclassified Bacteria 267176, Unclassified Bacteria 267904, Kingella sp., Unclassified Hyphomicrobiaceae 271552, Unclassified Bacteria 271781, Unclassified Rhodospirillaceae 271838, Unclassified Hyphomicrobiaceae 271976, Unclassified Rhodobacteraceae 271987, Unclassified Bacteria 272108, Unclassified Bacteria 272110, Unclassified Rhodospirillaceae 272246, Unclassified Rhodobacteraceae 272555, Unclassified Piscirickettsiaceae 272558, Unclassified Bacteria 272562, Unclassified Rhodospirillaceae 273519, Unclassified Bacteria 273528, Unclassified Hyphomicrobiaceae 273529, Unclassified Hyphomicrobiaceae 273532, Unclassified Hyphomicrobiaceae 273533, Agrobacterium sp., Unclassified Hyphomicrobiaceae 273537, Unclassified Rhodobacteraceae 273540, Unclassified Rhodospirillaceae 273541, Unclassified Rhodobacteraceae 273545, Unclassified Rhodobacteraceae 273546, Unclassified Rhodospirillaceae 273548, Unclassified Bacteria 273549, Unclassified Hyphomicrobiaceae 273558, Unclassified Hyphomicrobiaceae 273560, Unclassified Hyphomicrobiaceae 273563, Unclassified Hyphomicrobiaceae 273564, Unclassified Rhodobacteraceae 273565, Unclassified Rhodobacteraceae 273566, Unclassified Hyphomicrobiaceae 273568, Unclassified Rhodospirillaceae 273569, Unclassified Rhodospirillaceae 273570, Unclassified Bacteria 273572, Unclassified Rhodobacteraceae 273573, Unclassified Rhodobacteraceae 273574, Unclassified Bacteria 273575, Unclassified Bacteria 273576, Unclassified Bacteria 273577, Unclassified Bacteria 273578, Unclassified Bacteria 273579, Unclassified Bacteria 273580, Unclassified Bacteria 273581, Unclassified Hyphomicrobiaceae 273588


DNA analysis conducted by AquaBiomics LLC.

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Certificate of Analysis LRS G6.3

Certificate of Analysis: Live Reef Sand, Batch LRS G6.3

lrs.g6.3_Certificate_of_Analysis

    Certificate of Analysis



About this report

This report summarizes the results from DNA analysis of the community growing in a batch of Live Reef Sand. Universal genetic markers were amplified from microbial (prokaryotic) and other (eukaryotic) DNA in the sample, and thousands of individual DNA molecules from this mixture were sequenced. Each sequence was then compared with public DNA databases to identify its origin. This report summarizes the kinds of organisms detected in the sample, with a focus on beneficial microbes, pathogens, and parasites.

Information about this sample

Sample ID lrs.g6.3
Batch Name G04-01-2025
Sample Date May 28, 2025 8:00 AM

Microbial Diversity

This sample contained DNA from 629 different types of microbes.


This pie chart shows the diversity of each microbial family found in the sample. The size of each slice is proportional to the number of different types (labels on each slice). For clarity, only families with 2 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Nitrifying Community

Ammonia-Oxidizing Microbes

Cenarchaeaceae
Type Percent of Community Genus Species
760 0.74 Nitrosopumilus Unknown
73 0.43 Nitrosopumilus Unknown
640 0.11 Nitrosopumilus Unknown
2996 0.10 Nitrosopumilus Unknown
3535 0.02 Cenarchaeum symbiosum
248127 0.02 Unknown Unknown
265662 0.02 Nitrosopumilus Unknown
10731 0.01 Unknown Unknown
14134 0.01 Nitrosopumilus Unknown
14173 0.01 Nitrosopumilus Unknown
17287 0.01 Nitrosopumilus Unknown
265528 0.01 Nitrosopumilus Unknown

Nitrite-Oxidizing Bacteria

Nitrospiraceae
Type Percent of Community Genus Species
55498 0.02 Unknown Unknown
25186 0.01 Unknown Unknown
The nitrifying community in this sample included 14 different types of microbes.

Bacterial Pathogens

None found.

Complete list of pathogens we screened for:

Eubacterium tarantellae, Lactococcus garvieae, Enterococcus seriolicida, Streptococcus parauberis, Streptococcus iniae, Mycobacterium chelonei, Mycobacterium fortuitum, Mycobacterium marinum, Mycobacterium neoaurum, Nocardia asteroides, Nocardia salmonicida, Nocardia seriolae, Renibacterium salmoninarum, Aeromonas jandaei, Aeromonas salmonicida, Serratia liquefaciens, Chryseobacterium balustinum, Chryseobacterium scophthalmum, Tenacibaculum maritimus, Tenacibaculum ovolyticus, Pasteurella skyensis, Pseudomonas anguilliseptica, Moritella marina, Moritella viscosa, Photobacterium damselae, Shewanella putrefaciens, Vibrio alginolyticus, Vibrio cholerae, Vibrio fischeri, Vibrio furnissii, Vibrio harveyi, Vibrio carchariae, Vibrio trachuri, Vibrio ichthyoenteri, Vibrio logei, Vibrio ordalii, Vibrio pelagius, Vibrio salmonicida, Vibrio splendidus, Halomonas cupida, Piscirickettsia salmonis, Vibrio shiloi, Vibrio coralliilyticus, Vibrio harveyi, Aurantimonas coralicida, Vibrio rotiferianus, Vibrio alginolyticus, Vibrio proteolyticus, Vibrio charcharvina, Serratia marscesens, Aquarickettsia rohweri

Eukaryotic Biodiversity

This sample contained DNA from 1159 different Eukaryotic sources.


This pie chart shows the diversity of each Eukaryotic Phylum detected in the sample. The size of each slice is proportional to the number of different types from each phylum. For clarity, only families with 3 or more types are shown here. Unidentified sequences lacking any match in public databases are not shown.

Parasites

None of the DNA sequences from this sample matched known parasites.
Group Description Percent of eDNA
Amyloodinium Dinoflagellate parasites responsible for the fish disease Marine Velvet 0
Cryptocaryon Ciliate parasites responsible for the fish disease Ich 0
Brooklynella Ciliate parasites responsible for the fish disease Brook 0
Uronema Ciliate parasites responsible for a fish disease called by the same name 0
Phestilla Montipora-eating Nudibranchs 0
Amakusaplana Acropora-eating Flatworms 0
Ancyrocephalidae Flatworms often called Flukes that parasitize fish 0
Gyrodactylidae Flatworms often called Flukes that parasitize fish 0
Capsalidae Flatworms often called Flukes that parasitize fish 0
Turbonilla Snails in the family Pyramidellidae that parasitize giant clams 0
Trichodina A ciliated protozoan parasite of fish 0

Other Animal Pests

None of the DNA sequences from this sample matched known animal pests.
Group Description Percent of eDNA
Aiptasia The glass anemone, a ubiquitous pest 0
Thylacodes Vermetid snails 0
Asterina A group of sea stars that includes coral predators 0

Complete list of Eukaryotes identified

This list includes all Eukaryotes (Animals, Protists, and anything else besides Bacteria or Archaea) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Howeina sp. (Arthropoda), Acaromantis vespucioi (Arthropoda), Coquimba ishizakii (Arthropoda), Simognathus sp. (Arthropoda), Humulus lupulus (Ascomycota), Clavispora lusitaniae (Ascomycota), Cladosporium herbarum (Ascomycota), Postia placenta (Basidiomycota), Cryptococcus sp. (Basidiomycota), uncultured Tremellomycetes 137135 (Basidiomycota), metagenome (Basidiomycota), Malassezia globosa (Basidiomycota), uncultured fungus 163665 (Basidiomycota), Malassezia restricta (Basidiomycota), Wallemia sebi (Basidiomycota), Piskurozyma capsuligena (Basidiomycota), Psathyrella candolleana (Basidiomycota), Naganishia antarctica (Basidiomycota), Trametes versicolor (Basidiomycota), Hyphodontia subalutacea (Basidiomycota), Filobasidium floriforme (Basidiomycota), Marchandiobasidium aurantiacum (Basidiomycota), metagenome (Centrohelida), uncultured eukaryote 423746 (Centrohelida), Paradinium poucheti (Cercozoa), Esquamula lacrimiformis (Cercozoa), uncultured marine 15485 (Cercozoa), uncultured eukaryote 2529 (Cercozoa), Gromia oviformis (Cercozoa), Ventrifissura sp. (Cercozoa), Protaspis sp. (Cercozoa), uncultured eukaryote 207275 (Cercozoa), uncultured eukaryote 422100 (Cercozoa), uncultured marine 422565 (Cercozoa), uncultured marine 422567 (Cercozoa), Haplosporidian parasite (Cercozoa), Protaspis grandis (Cercozoa), Protaspis obliqua (Cercozoa), uncultured eukaryote 424101 (Cercozoa), metagenome (Cercozoa), uncultured marine 317051 (Cercozoa), Reckertia gemma (Cercozoa), Eocercomonas perecta (Cercozoa), uncultured marine 417271 (Cercozoa), Massisteria marina (Cercozoa), marine metagenome (Cercozoa), Gymnophrys sp. (Cercozoa), uncultured Cercomonas 425763 (Cercozoa), uncultured eukaryote 425765 (Cercozoa), uncultured Cercozoa 425770 (Cercozoa), Euplotes sinicus (Ciliophora), Eutintinnus cf. (Ciliophora), Protogastrostyla pulchra (Ciliophora), Cinetochilum ovale (Ciliophora), Protocruzia adherens (Ciliophora), Strombidium paracalkinsi (Ciliophora), uncultured eukaryote 2287 (Ciliophora), Diophrys parappendiculata (Ciliophora), Apogastrostyla rigescens (Ciliophora), uncultured eukaryote 402703 (Ciliophora), Loxophyllum perihoplophorum (Ciliophora), Protogastrostyla sterkii (Ciliophora), uncultured eukaryote 60655 (Ciliophora), uncultured alveolate 403255 (Ciliophora), uncultured ciliate 421514 (Ciliophora), uncultured eukaryote 421793 (Ciliophora), uncultured ciliate 421801 (Ciliophora), metagenome (Ciliophora), Cyclidium plouneouri (Ciliophora), Anophryoides haemophila (Ciliophora), Diophrys apoligothrix (Ciliophora), uncultured eukaryote 423091 (Ciliophora), Hemigastrostyla enigmatica (Ciliophora), uncultured eukaryote 424068 (Ciliophora), uncultured marine 424071 (Ciliophora), uncultured marine 424072 (Ciliophora), uncultured eukaryote 424675 (Ciliophora), uncultured eukaryote 424684 (Ciliophora), uncultured eukaryote 424685 (Ciliophora), uncultured eukaryote 424686 (Ciliophora), uncultured Oxytrichidae 407821 (Ciliophora), uncultured Eimeriidae 417345 (Ciliophora), Loxophyllum utriculariae (Ciliophora), uncultured eukaryote 425709 (Ciliophora), uncultured eukaryote 425711 (Ciliophora), uncultured eukaryote 425712 (Ciliophora), uncultured marine 425713 (Ciliophora), Lacrymaria marina (Ciliophora), uncultured Chytridiomycota 422973 (Cryptomycota), uncultured Chytridiomycota 267780 (Cryptomycota), uncultured Chytridiomycota 424792 (Cryptomycota), uncultured Chytridiomycota 424794 (Cryptomycota), uncultured eukaryote 198850 (Diatomea), Psammodictyon constrictum (Diatomea), Rhaphoneis sp. (Diatomea), Pseudogomphonema sp. (Diatomea), Thalassiosira hendeyi (Diatomea), uncultured eukaryote 421190 (Diatomea), uncultured marine 267941 (Diatomea), Rhaphoneis belgicae (Diatomea), uncultured marine 6590 (Diatomea), uncultured eukaryote 314832 (Diatomea), Navicula arenaria (Diatomea), Tryblionella apiculata (Diatomea), Pseudo-nitzschia pungens (Diatomea), Paralia sulcata (Diatomea), uncultured eukaryote 402670 (Diatomea), uncultured stramenopile 142135 (Diatomea), uncultured marine 171408 (Diatomea), Nitzschia cf. (Diatomea), uncultured eukaryote 141758 (Diatomea), uncultured eukaryote 6222 (Diatomea), Protokeelia bassonii (Diatomea), Biddulphia tridens (Diatomea), Actinella sp. (Diatomea), uncultured marine 422707 (Diatomea), uncultured marine 305339 (Diatomea), uncultured eukaryote 319094 (Diatomea), Pleurosigma sp. (Diatomea), uncultured eukaryote 422962 (Diatomea), Amphora sp. (Diatomea), Amphora cf. (Diatomea), uncultured eukaryote 281236 (Diatomea), uncultured marine 423288 (Diatomea), uncultured eukaryote 52878 (Diatomea), uncultured marine 318923 (Diatomea), uncultured eukaryote 402714 (Diatomea), Haslea spicula (Diatomea), Hippodonta capitata (Diatomea), Navicula salinicola (Diatomea), uncultured stramenopile 423733 (Diatomea), Psammodictyon panduriforme (Diatomea), uncultured marine 60591 (Diatomea), uncultured marine 271326 (Diatomea), Amphora laevis (Diatomea), uncultured marine 423453 (Diatomea), Cylindrotheca fusiformis (Diatomea), uncultured marine 141668 (Diatomea), uncultured marine 152470 (Diatomea), uncultured marine 186955 (Diatomea), Navicula veneta (Diatomea), uncultured eukaryote 402676 (Diatomea), Caloneis sp. (Diatomea), Navicula vara (Diatomea), uncultured marine 403095 (Diatomea), Nitzschia filiformis (Diatomea), uncultured marine 424065 (Diatomea), uncultured stramenopile 424067 (Diatomea), Bacillaria paxillifer (Diatomea), uncultured stramenopile 424662 (Diatomea), uncultured marine 424663 (Diatomea), uncultured marine 424664 (Diatomea), uncultured stramenopile 424670 (Diatomea), uncultured Minutocellus 424673 (Diatomea), uncultured eukaryote 424804 (Diatomea), uncultured marine 424814 (Diatomea), uncultured marine 424815 (Diatomea), uncultured marine 424816 (Diatomea), uncultured marine 424817 (Diatomea), Craticula pseudocitrus (Diatomea), uncultured eukaryote 258583 (Diatomea), uncultured marine 305581 (Diatomea), uncultured eukaryote 325512 (Diatomea), uncultured stramenopile 402770 (Diatomea), uncultured eukaryote 402957 (Diatomea), uncultured eukaryote 402976 (Diatomea), Tursiocola cf. (Diatomea), uncultured marine 403201 (Diatomea), uncultured eukaryote 403420 (Diatomea), uncultured marine 403444 (Diatomea), uncultured eukaryote 403853 (Diatomea), uncultured marine 405869 (Diatomea), uncultured eukaryote 407801 (Diatomea), uncultured eukaryote 407811 (Diatomea), uncultured marine 407813 (Diatomea), uncultured marine 407871 (Diatomea), uncultured marine 416825 (Diatomea), uncultured marine 416832 (Diatomea), uncultured marine 416840 (Diatomea), uncultured stramenopile 416891 (Diatomea), uncultured stramenopile 416892 (Diatomea), Nitzschia sp. (Diatomea), Entomoneis sp. (Diatomea), uncultured eukaryote 425689 (Diatomea), uncultured marine 425696 (Diatomea), uncultured stramenopile 425702 (Diatomea), uncultured stramenopile 425703 (Diatomea), uncultured eukaryote 425704 (Diatomea), uncultured eukaryote 425710 (Diatomea), uncultured marine 425732 (Diatomea), uncultured marine 425736 (Diatomea), Heterocapsa triquetra (Dinoflagellata), uncultured marine 402679 (Dinoflagellata), Alexandrium insuetum (Dinoflagellata), uncultured marine 402677 (Dinoflagellata), Alexandrium ostenfeldii (Dinoflagellata), Pfiesteria-like sp. (Dinoflagellata), Gymnodinium sp. (Dinoflagellata), uncultured eukaryote 206378 (Dinoflagellata), uncultured eukaryote 422498 (Dinoflagellata), uncultured marine 422574 (Dinoflagellata), uncultured eukaryote 423303 (Dinoflagellata), uncultured eukaryote 423747 (Dinoflagellata), uncultured eukaryote 423781 (Dinoflagellata), uncultured marine 423478 (Dinoflagellata), uncultured eukaryote 208881 (Dinoflagellata), Leiocephalium pseudosanguineum (Dinoflagellata), uncultured eukaryote 424095 (Dinoflagellata), uncultured eukaryote 424111 (Dinoflagellata), uncultured marine 424113 (Dinoflagellata), uncultured eukaryote 424124 (Dinoflagellata), uncultured marine 424125 (Dinoflagellata), uncultured eukaryote 424127 (Dinoflagellata), uncultured eukaryote 424130 (Dinoflagellata), uncultured eukaryote 424672 (Dinoflagellata), uncultured eukaryote 424835 (Dinoflagellata), Symbiodinium sp. (Dinoflagellata), uncultured marine 268361 (Dinoflagellata), uncultured marine 418556 (Dinoflagellata), uncultured eukaryote 425734 (Dinoflagellata), Protodinium simplex (Dinoflagellata), uncultured eukaryote 425747 (Dinoflagellata), uncultured eukaryote 425777 (Dinoflagellata), uncultured marine 425810 (Dinoflagellata), uncultured eukaryote 425811 (Dinoflagellata), uncultured marine 425812 (Dinoflagellata), uncultured eukaryote 425814 (Dinoflagellata), uncultured eukaryote 425815 (Dinoflagellata), metagenome (Dinoflagellata), uncultured eukaryote 425819 (Dinoflagellata), Blastodinium pruvoti (Dinoflagellata), Diplonema sp. (Euglenozoa), uncultured eukaryote 402888 (Euglenozoa), uncultured eukaryote 34327 (Euglenozoa), Notosolenus urceolatus (Euglenozoa), Neobodo saliens (Euglenozoa), uncultured eukaryote 35940 (Eukaryota), Symbiochloris sp. (Eukaryota), Paraphysomonas imperforata (Eukaryota), uncultured eukaryote 1494 (Eukaryota), uncultured eukaryote 3043 (Eukaryota), uncultured eukaryote 406445 (Eukaryota), metagenome (Eukaryota), Pterosperma cristatum (Eukaryota), uncultured eukaryote 423771 (Eukaryota), Pirum gemmata (Eukaryota), uncultured Chlorophyta 423469 (Eukaryota), Pterosperma sp. (Eukaryota), uncultured eukaryote 424669 (Eukaryota), uncultured eukaryote 424779 (Eukaryota), uncultured Eimeriidae 424780 (Eukaryota), uncultured marine 424785 (Eukaryota), uncultured marine 424840 (Eukaryota), Ulvella viridis (Eukaryota), uncultured eukaryote 403956 (Eukaryota), Ciliophrys infusionum (Eukaryota), Rhizoclonium hieroglyphicum (Eukaryota), Micromonas pusilla (Eukaryota), Chattonella subsalsa (Eukaryota), uncultured stramenopile 425694 (Eukaryota), Spumella-like flagellate (Eukaryota), uncultured marine 425761 (Eukaryota), uncultured eukaryote 425764 (Eukaryota), Telonema subtile (Eukaryota), Peyssonnelia novae-hollandiae (Florideophycidae), uncultured Corallinales 32406 (Florideophycidae), uncultured Corallinales 32421 (Florideophycidae), uncultured Corallinales 152450 (Florideophycidae), uncultured marine 2482 (Labyrinthulomycetes), Stellarchytrium dubum (Labyrinthulomycetes), Oblongichytrium sp. (Labyrinthulomycetes), uncultured marine 1339 (Labyrinthulomycetes), uncultured eukaryote 222516 (Labyrinthulomycetes), Aplanochytrium stocchinoi (Labyrinthulomycetes), Thraustochytriidae sp. (Labyrinthulomycetes), Thraustochytrium pachydermum (Labyrinthulomycetes), uncultured eukaryote 5655 (Labyrinthulomycetes), labyrinthulid quahog (Labyrinthulomycetes), uncultured eukaryote 402669 (Labyrinthulomycetes), uncultured marine 421848 (Labyrinthulomycetes), Thraustochytrium multirudimentale (Labyrinthulomycetes), Aplanochytrium sp. (Labyrinthulomycetes), uncultured eukaryote 72 (Labyrinthulomycetes), uncultured eukaryote 422784 (Labyrinthulomycetes), uncultured marine 423776 (Labyrinthulomycetes), uncultured eukaryote 403609 (Labyrinthulomycetes), Labyrinthuloides minuta (Labyrinthulomycetes), uncultured eukaryote 326922 (Labyrinthulomycetes), uncultured stramenopile 424110 (Labyrinthulomycetes), uncultured marine 424654 (Labyrinthulomycetes), uncultured marine 424761 (Labyrinthulomycetes), uncultured marine 424765 (Labyrinthulomycetes), uncultured marine 424769 (Labyrinthulomycetes), uncultured marine 425755 (Labyrinthulomycetes), uncultured eukaryote 425756 (Labyrinthulomycetes), uncultured stramenopile 425774 (Labyrinthulomycetes), uncultured marine 425784 (Labyrinthulomycetes), Pseudophyllomitus vesiculosus (MAST-6), eukaryote marine (MAST-6), Haliphthoros sp. (Peronosporomycetes), Halodaphnea panulirata (Peronosporomycetes), metagenome (Peronosporomycetes), Ixonanthes icosandra (Phragmoplastophyta), Erythranthe guttata (Phragmoplastophyta), uncultured Dunaliellaceae 424679 (Phragmoplastophyta), uncultured Dunaliellaceae 424687 (Phragmoplastophyta), Hordeum vulgare (Phragmoplastophyta), Gilliesia graminea (Phragmoplastophyta), Ipomoea nil (Phragmoplastophyta), uncultured marine 314816 (Protalveolata), uncultured marine 421668 (Protalveolata), uncultured eukaryote 423299 (Protalveolata), uncultured eukaryote 423470 (Protalveolata), uncultured eukaryote 424831 (Protalveolata), uncultured eukaryote 425818 (Protalveolata)

Complete List of Microbes Identified

This list includes all microbes (Bacteria & Archae) that were detected in the sample and identified based on comparison with public DNA sequence databases. DNA sequences that lacked any matches in public datases could not be identified, and are not shown here. The list is sorted by abundance, from highest to lowest.

Unclassified Rhodobacteraceae 26146, Unclassified Rhodobacteraceae 733, Pseudoalteromonas sp., ZD0117 sp., Unclassified Rhodobacteraceae 694, Vibrio sp., Unclassified Rhodobacteraceae 54917, Alteromonas sp., Unclassified Hyphomicrobiaceae 3321, Unclassified Rhodobacteraceae 102, Unclassified Bacteria 10206, Unclassified Rhodobacteraceae 113, Unclassified Bacteria 25759, Unclassified Legionellaceae 792, Unclassified Alteromonadaceae 771, Unclassified Rhodospirillaceae 225, Exiguobacterium sp., Idiomarina sp., Unclassified Hyphomonadaceae 290, Oleibacter sp., Nitrosopumilus sp., Unclassified J115 3021, Flavobacterium sp., Unclassified Oceanospirillaceae 81, Bacillus flexus, Bacteriovorax sp., Unclassified Alteromonadaceae 942, Amaricoccus sp., Unclassified Coxiellaceae 113277, Unclassified Rhodobacteraceae 11254, Unclassified Bacteria 249, Unclassified Rhodobacteraceae 270964, Unclassified Bacteria 4430, Unclassified Flavobacteriaceae 6743, Streptococcus sp., Unclassified Bacteria 270991, Unclassified Oceanospirillaceae 748, Unclassified Rhodobacteraceae 154828, Unclassified Rhodobacteraceae 271006, Unclassified J115 635, Neptunomonas sp., Unclassified Hyphomicrobiaceae 1489, Unclassified Bacteria 9721, Unclassified Hyphomicrobiaceae 37393, Unclassified Flavobacteriaceae 25205, Rhodovulum sp., Unclassified Hyphomicrobiaceae 137802, Cobetia sp., Bdellovibrio sp., Unclassified Oceanospirillaceae 62356, Unclassified Oleiphilaceae 271067, Unclassified Hyphomicrobiaceae 286, Unclassified Alteromonadaceae 146276, Unclassified Bacteria 265295, Unclassified Bacteria 27069, Unclassified Bacteria 81096, Unclassified Bacteria 270920, Unclassified Saprospiraceae 4267, Unclassified Bacteria 46553, Unclassified Oceanospirillaceae 271193, Unclassified Bacteria 26049, Mycobacterium sp., Unclassified Bacteria 12277, Unclassified Bacteria 37669, Unclassified Bacteria 265304, Octadecabacter sp., Unclassified Rhodobacteraceae 271268, Unclassified Rhodobacteraceae 1055, Balneola sp., Unclassified Cryomorphaceae 89045, Unclassified Bacteria 99471, Unclassified J115 162581, Unclassified Rhodobacteraceae 271319, Unclassified J115 271358, Unclassified Coxiellaceae 1417, Unclassified Pirellulaceae 109572, Luteolibacter sp., Unclassified Rhodobacteraceae 271382, Unclassified Bacteria 1800, Unclassified Bacteria 16462, Unclassified Saprospiraceae 25889, Unclassified Pirellulaceae 31779, Unclassified Bacteria 62060, Unclassified Legionellaceae 117826, Unclassified J115 139368, Microbulbifer sp., Unclassified Bacteria 195182, Unclassified Alteromonadaceae 271526, Unclassified Phyllobacteriaceae 2578, Phormidium sp., Unclassified Rhodobacteraceae 271671, Unclassified Rhodobacteraceae 271672, HTCC sp., Unclassified Rhodobacteraceae 41, Unclassified Hyphomicrobiaceae 273, Staphylococcus aureus, Candidatus sp., Unclassified Bacteria 710, Unclassified Chitinophagaceae 837, Ucs1325 sp., Unclassified Bacteria 3108, Unclassified Bacteria 43183, Unclassified Bacteria 74055, Unclassified Bacteria 99482, Unclassified mitochondria 196497, Unclassified Coxiellaceae 265305, Unclassified Bacteria 265331, Unclassified Bacteria 265360, Rickettsia sp., Unclassified Lentisphaeraceae 265415, Unclassified Oleiphilaceae 271470, Unclassified Rhodospirillaceae 271633, Unclassified Rhodobacteraceae 271908, Unclassified Rhodobacteraceae 271910, Unclassified Alteromonadaceae 271911, Unclassified Bacteria 30, Unclassified Bacteria 2152, Unclassified Coxiellaceae 2257, Cenarchaeum symbiosum, Unclassified Kordiimonadaceae 3562, Unclassified Bacteria 4868, Pseudomonas sp., Pelagicoccus sp., Unclassified Lentisphaeraceae 16575, Veillonella sp., Paracoccus aminovorans, Unclassified Bacteria 36004, Coraliomargarita sp., Unclassified Xenococcaceae 43854, Hirschia baltica, Unclassified Nitrospiraceae 55498, Unclassified Bacteria 68430, Unclassified Bacteria 74060, Unclassified Bacteria 81476, Nautella sp., Unclassified Hyphomicrobiaceae 150024, Plesiocystis sp., Unclassified Cenarchaeaceae 248127, Unclassified kpj58rc 265361, Unclassified Bacteria 265506, Unclassified Bacteria 265533, Unclassified Saprospiraceae 265667, Unclassified Rhodobacteraceae 271706, Unclassified Rhodobacteraceae 272342, Unclassified Rhodobacteraceae 272345, Unclassified Bacteria 272346, Unclassified Rhodobacteraceae 272347, Unclassified Rhodobacteraceae 272348, Unclassified Rhodobacteraceae 272349, Unclassified Rhodobacteraceae 272350, Unclassified Rhodobacteraceae 272351, Unclassified Rhodobacteraceae 272353, Unclassified Rhodobacteraceae 272354, Unclassified Bacteria 272355, Unclassified Bacteria 272357, Unclassified Bacteria 272358, Unclassified Alteromonadaceae 88, Unclassified Oleiphilaceae 175, Maricaulis sp., Unclassified Bacteria 791, Unclassified Bacteria 949, Unclassified Flammeovirgaceae 1479, Unclassified Bacteria 1488, Corynebacterium kroppenstedtii, Unclassified Bacteria 2299, Unclassified Bacteria 2338, Unclassified Simkaniaceae 2541, Streptococcus infantis, Photobacterium sp., Unclassified Bacteria 3308, Unclassified Francisellaceae 4746, Unclassified Bacteria 5932, Unclassified Hyphomicrobiaceae 9813, Unclassified Bacteria 10172, Unclassified Cenarchaeaceae 10731, Unclassified Bacteria 11411, Unclassified Pirellulaceae 14949, Bacillus sp., Unclassified Nitrospiraceae 25186, Neisseria sp., Roseivirga sp., Unclassified Hyphomicrobiaceae 32346, Unclassified Bacteria 55231, Unclassified Alteromonadaceae 74427, Unclassified Flammeovirgaceae 88338, Unclassified Bacteria 93586, Unclassified Bacteria 108068, Desulfococcus sp., Unclassified Lachnospiraceae 110488, Unclassified J115 144325, Unclassified Micrococcaceae 154917, Unclassified Hyphomicrobiaceae 184924, Unclassified J115 192857, Unclassified Bacteria 207666, Crocinitomix sp., Unclassified Bacteria 220967, Unclassified J115 242162, Unclassified Thiotrichaceae 248993, Unclassified Bacteria 253202, Unclassified Hyphomicrobiaceae 256123, Unclassified J115 256238, Rhodococcus sp., Unclassified Bacteria 265222, Unclassified Coxiellaceae 265326, Unclassified Bacteria 265456, Unclassified Coxiellaceae 265457, Unclassified Bacteria 265531, Unclassified Bacteria 265604, Unclassified Bacteria 265726, Unclassified Rickettsiaceae 265790, Unclassified Rickettsiaceae 265800, Unclassified Bacteria 265878, Unclassified Bacteria 265884, Unclassified Bacteria 265992, Unclassified Criblamydiaceae 266390, SC3-56 sp., Unclassified Bacteria 267176, Unclassified Bacteria 267932, Unclassified Bacteria 267933, Unclassified Bacteria 269948, Unclassified Hyphomicrobiaceae 271138, Unclassified Hyphomicrobiaceae 271549, Unclassified Rhodobacteraceae 271909, Unclassified Rhodobacteraceae 272096, Unclassified Rhodospirillaceae 272246, Unclassified Alteromonadaceae 272764, Unclassified Rhodobacteraceae 273895, Unclassified Rhodospirillaceae 273896, Unclassified Rhodospirillaceae 273897, Unclassified Alteromonadaceae 273898, Unclassified Coxiellaceae 273899, Unclassified Bacteria 273901, Unclassified J115 273903, Unclassified Hyphomicrobiaceae 273905, Unclassified Rhodobacteraceae 273906, Cerasicoccus sp., Unclassified Rhodobacteraceae 273913, Unclassified Rhodospirillaceae 273914, Unclassified Rhodobacteraceae 273916, Unclassified Rhodobacteraceae 273917, Unclassified Hyphomicrobiaceae 273918, Unclassified Rhodobacteraceae 273920, Unclassified Rhodobacteraceae 273922, Unclassified Rhodobacteraceae 273923, Unclassified Rhodobacteraceae 273924, Unclassified Rhodobacteraceae 273925, Unclassified Oceanospirillaceae 273926, Unclassified Rhodobacteraceae 273927, Unclassified Hyphomicrobiaceae 273928, Unclassified Rhodobacteraceae 273929, Unclassified J115 273931, Unclassified Bacteria 273935, Unclassified Oceanospirillaceae 273936, Unclassified J115 273937, Unclassified Alteromonadaceae 273938, Pseudoalteromonas porphyrae, Unclassified Legionellaceae 273946, Unclassified Legionellaceae 273947, Unclassified Legionellaceae 273948, Unclassified Legionellaceae 273949, Unclassified Rhodobacteraceae 273951, Unclassified Alteromonadaceae 273952


DNA analysis conducted by AquaBiomics LLC.